Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0485
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein (spl...    71   4e-13
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    71   4e-13
U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene...    31   0.44 
U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprote...    31   0.44 
AF038623-4|AAO91699.1|  177|Caenorhabditis elegans Hypothetical ...    31   0.44 
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    30   0.58 
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U23484-11|AAC46764.2|  191|Caenorhabditis elegans Hypothetical p...    29   1.8  
U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U23484-10|AAC46772.1|  197|Caenorhabditis elegans Hypothetical p...    27   5.5  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform b protein.
          Length = 126

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 28/45 (62%), Positives = 38/45 (84%)
 Frame = +3

Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           R  P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10  RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 320 LDTMDGRMLDGRELRXQMA 376
           LD  DG+++DGRELR  +A
Sbjct: 77  LDRTDGKLVDGRELRVTLA 95


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 28/45 (62%), Positives = 38/45 (84%)
 Frame = +3

Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           R  P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10  RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 320 LDTMDGRMLDGRELRXQMA 376
           LD  DG+++DGRELR  +A
Sbjct: 77  LDRTDGKLVDGRELRVTLA 95


>U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene on
           x protein 1 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242
           DG   L V N+ +R    DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184


>U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprotein
           protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242
           DG   L V N+ +R    DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184


>AF038623-4|AAO91699.1|  177|Caenorhabditis elegans Hypothetical
           protein T08B6.5 protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           S+ V N+ +++T  ++   F  CG+V  + IP+D+  G
Sbjct: 47  SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 165 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           NL Y T  +DL+ +F++ GEV ++ +  D+  G
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           L V NL+  TT +DLR VF   GE+    +  DR  G
Sbjct: 78  LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114


>U23484-11|AAC46764.2|  191|Caenorhabditis elegans Hypothetical
           protein EEED8.4 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           S+ + N+ + +T E++   F+ CG++    IP+D+
Sbjct: 56  SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDK 90


>U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical
           protein C30B5.4 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           +  L+Y  +  D+  VF + GEV +I + RD+  GK
Sbjct: 42  IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77


>U23484-10|AAC46772.1|  197|Caenorhabditis elegans Hypothetical
           protein EEED8.12 protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           S+ + N+ + +T E++   F+ CG +    IP+D+
Sbjct: 62  SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDK 96


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 66  FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPE 191
           F  FD S +S  LK        R+ G+VS  VDN+ Y TTP+
Sbjct: 669 FTNFDSSSVSATLK--------RLKGLVSY-VDNMQYETTPD 701


>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 183  TPEDLRRVFERCGEVGDIYIPRDRTQ 260
            TPE+++++ E CG++  I  P +  Q
Sbjct: 1133 TPENVQKIIELCGQILQITKPNETLQ 1158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,124
Number of Sequences: 27780
Number of extensions: 156589
Number of successful extensions: 372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)