BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0485 (419 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 71 4e-13 U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 71 4e-13 U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.44 U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.44 AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 31 0.44 Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.58 Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.77 Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.77 Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 0.77 Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 1.4 U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 1.8 U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 27 4.1 U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 27 5.5 U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 26 9.5 U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 26 9.5 >U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform b protein. Length = 126 Score = 70.5 bits (165), Expect = 4e-13 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = +3 Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+ Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54 Score = 28.3 bits (60), Expect = 2.4 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 320 LDTMDGRMLDGRELRXQMA 376 LD DG+++DGRELR +A Sbjct: 77 LDRTDGKLVDGRELRVTLA 95 >U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform a protein. Length = 196 Score = 70.5 bits (165), Expect = 4e-13 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = +3 Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+ Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54 Score = 28.3 bits (60), Expect = 2.4 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 320 LDTMDGRMLDGRELRXQMA 376 LD DG+++DGRELR +A Sbjct: 77 LDRTDGKLVDGRELRVTLA 95 >U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on x protein 1 protein. Length = 415 Score = 30.7 bits (66), Expect = 0.44 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242 DG L V N+ +R DL+ +FE+ G V D+ I Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184 >U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein protein. Length = 415 Score = 30.7 bits (66), Expect = 0.44 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242 DG L V N+ +R DL+ +FE+ G V D+ I Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184 >AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical protein T08B6.5 protein. Length = 177 Score = 30.7 bits (66), Expect = 0.44 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 S+ V N+ +++T ++ F CG+V + IP+D+ G Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84 >Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical protein T23F6.4 protein. Length = 872 Score = 30.3 bits (65), Expect = 0.58 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +3 Query: 165 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 NL Y T +DL+ +F++ GEV ++ + D+ G Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317 >Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 29.9 bits (64), Expect = 0.77 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263 TT EDL +F R G++ + I RDR G Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279 >Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 29.9 bits (64), Expect = 0.77 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263 TT EDL +F R G++ + I RDR G Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279 >Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical protein F39H2.2b protein. Length = 358 Score = 29.9 bits (64), Expect = 0.77 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 180 TTPEDLRRVFERCGEVGDIYIPRDRTQG 263 TT EDL +F R G++ + I RDR G Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210 >Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical protein C18D11.4 protein. Length = 309 Score = 29.1 bits (62), Expect = 1.4 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 L V NL+ TT +DLR VF GE+ + DR G Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114 >U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical protein EEED8.4 protein. Length = 191 Score = 28.7 bits (61), Expect = 1.8 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ + N+ + +T E++ F+ CG++ IP+D+ Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDK 90 >U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical protein C30B5.4 protein. Length = 302 Score = 27.5 bits (58), Expect = 4.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 + L+Y + D+ VF + GEV +I + RD+ GK Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77 >U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical protein EEED8.12 protein. Length = 197 Score = 27.1 bits (57), Expect = 5.5 Identities = 10/35 (28%), Positives = 21/35 (60%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ + N+ + +T E++ F+ CG + IP+D+ Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDK 96 >U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical protein F59A6.4 protein. Length = 752 Score = 26.2 bits (55), Expect = 9.5 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 66 FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPE 191 F FD S +S LK R+ G+VS VDN+ Y TTP+ Sbjct: 669 FTNFDSSSVSATLK--------RLKGLVSY-VDNMQYETTPD 701 >U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein F21H12.6 protein. Length = 1374 Score = 26.2 bits (55), Expect = 9.5 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +3 Query: 183 TPEDLRRVFERCGEVGDIYIPRDRTQ 260 TPE+++++ E CG++ I P + Q Sbjct: 1133 TPENVQKIIELCGQILQITKPNETLQ 1158 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,404,124 Number of Sequences: 27780 Number of extensions: 156589 Number of successful extensions: 372 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 361 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 372 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 682028672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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