BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0485 (419 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 51 4e-07 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 51 4e-07 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 2e-04 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 41 3e-04 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 7e-04 At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.004 At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.008 At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.008 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.019 At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.045 At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.045 At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.059 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.078 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.18 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 32 0.18 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 32 0.18 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.24 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.32 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 0.32 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 0.32 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.32 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.32 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.55 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 0.55 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 0.55 At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 0.55 At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 0.55 At1g30680.1 68414.m03751 toprim domain-containing protein contai... 29 0.97 At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 1.3 At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 29 1.3 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 1.3 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 2.2 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 28 2.2 At5g03480.1 68418.m00304 expressed protein ; expression support... 28 3.0 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 3.0 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 28 3.0 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 3.9 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 3.9 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 3.9 At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 3.9 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 27 3.9 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 27 3.9 At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 27 3.9 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 5.2 At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 5.2 At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 27 5.2 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 6.8 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 6.8 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 6.8 At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 6.8 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 27 6.8 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 27 6.8 At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 26 9.0 At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 26 9.0 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 26 9.0 At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 26 9.0 At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 26 9.0 At3g50180.1 68416.m05486 hypothetical protein 26 9.0 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 50.8 bits (116), Expect = 4e-07 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Frame = +3 Query: 114 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 +GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 50.8 bits (116), Expect = 4e-07 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Frame = +3 Query: 114 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 +GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 41.5 bits (93), Expect = 2e-04 Identities = 20/39 (51%), Positives = 24/39 (61%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 SL V N+ PE+LR FER G V D+YIPRD G+ Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 41.1 bits (92), Expect = 3e-04 Identities = 21/38 (55%), Positives = 24/38 (63%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 SL V NL + EDLRR FE+ G V DIY+PRD G Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 39.9 bits (89), Expect = 7e-04 Identities = 20/38 (52%), Positives = 24/38 (63%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 SL V NL + EDLR+ FE+ G V DIY+PRD G Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74 >At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 272 Score = 37.5 bits (83), Expect = 0.004 Identities = 17/36 (47%), Positives = 24/36 (66%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V NLT+RTT +DLRR FE+ G+V D + + G+ Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51 >At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI:1009363; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 156 Score = 36.3 bits (80), Expect = 0.008 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +3 Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 P+ + +L V L+ RTT E LR F + GEV D + DR G Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94 >At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28) nearly identical to SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana] GI:9843655; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 236 Score = 36.3 bits (80), Expect = 0.008 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 G L + NL P DLR FER G + DIY+PR+ G+ Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 35.1 bits (77), Expect = 0.019 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257 P G L V NL + +DLR+VFE G V + +PRD T Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDET 321 >At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non-consensus TA donor splice site at exon 6 Length = 379 Score = 33.9 bits (74), Expect = 0.045 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 114 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251 YGR P G+ + + V L + +DLR F R G + D YIP+D Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274 Score = 29.9 bits (64), Expect = 0.73 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 192 DLRRVFERCGEVGDIYIPRD 251 D R FER GE+ D+Y+P+D Sbjct: 106 DFRSHFERYGEITDLYMPKD 125 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 33.9 bits (74), Expect = 0.045 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +3 Query: 138 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ G+ Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149 >At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing protein low similarity to nucleolar phosphoprotein (Nopp52), Tetrahymena thermophila, EMBL:TT51555; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 597 Score = 33.5 bits (73), Expect = 0.059 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = +3 Query: 105 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 K S G P +DG + + NL + TT D+R++F C + + + +++ G+ Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 33.1 bits (72), Expect = 0.078 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +3 Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272 +Y PP ++ V NL T E+L++ F + GEV + IP + G V+ Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 31.9 bits (69), Expect = 0.18 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ V N+ Y TPE++++ F+ CG V + I D+ Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 138 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 31.9 bits (69), Expect = 0.18 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 SY R P + V L + T +++RR FE+ GE+ + I D+ GK Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 31.9 bits (69), Expect = 0.18 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 SY R P + V L + T +++RR FE+ GE+ + I D+ GK Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 31.5 bits (68), Expect = 0.24 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 L + NL ++ P D++ VF G V D++IP++ G Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 31.1 bits (67), Expect = 0.32 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V L + T EDL+R F + G+V D I DR G+ Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 31.1 bits (67), Expect = 0.32 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V L + T EDL+R F + G+V D I DR G+ Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 31.1 bits (67), Expect = 0.32 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V L + T EDL+R F + G+V D I DR G+ Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 31.1 bits (67), Expect = 0.32 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V L + T EDL+R F + G+V D I DR G+ Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 31.1 bits (67), Expect = 0.32 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYI---PRDRTQGKV 269 L N+ + +TPED+R +FE+ G V DI + ++R +G V Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLV 137 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 30.3 bits (65), Expect = 0.55 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ V N+ Y TPE++++ F+ CG V + I D+ Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK 127 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 30.3 bits (65), Expect = 0.55 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ V N+ Y TPE+++ F+ CG V + I D+ Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 30.3 bits (65), Expect = 0.55 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 S+ V N+ Y TPE+++ F+ CG V + I D+ Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124 >At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile: PF00076 RNA recognition motif Length = 636 Score = 30.3 bits (65), Expect = 0.55 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 189 EDLRRVFERCGEVGDIYIPRDRTQG 263 ++LR F +CGEV +++P DR G Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521 Score = 26.2 bits (55), Expect = 9.0 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +3 Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDI 236 G +L NL+Y+ D+ F+ GEV D+ Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDV 413 >At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 30.3 bits (65), Expect = 0.55 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +3 Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 SY R P + V L + T +++RR F++ GE+ + I D+ GK Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56 >At1g30680.1 68414.m03751 toprim domain-containing protein contains Pfam profile: PF01751 toprim domain Length = 709 Score = 29.5 bits (63), Expect = 0.97 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 219 GEVGDIYIPRDRTQGKVEDSP 281 G++GD Y+ DRT G DSP Sbjct: 675 GQIGDAYLCYDRTTGSYSDSP 695 >At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 198 Score = 29.1 bits (62), Expect = 1.3 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = +3 Query: 192 DLRRVFERCGEVGDIYIPRDR 254 +L+++F CGE+ D++IP R Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62 >At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical to receptor kinase (CLV1) GB:AAB58929 GI:2160756 [Arabidopsis thaliana] Length = 980 Score = 29.1 bits (62), Expect = 1.3 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +3 Query: 63 LFNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242 L NL L + + + G PP + G+VSLK +L+ ++ + F G + I + Sbjct: 261 LSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINL 320 Query: 243 PRDRTQGKVEDS 278 R+ G++ ++ Sbjct: 321 FRNNLYGQIPEA 332 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 29.1 bits (62), Expect = 1.3 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 111 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272 S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR G V+ Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 28.3 bits (60), Expect = 2.2 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V + + T DL VF + GE+ D+ + RD+ GK Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 28.3 bits (60), Expect = 2.2 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +3 Query: 93 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 S L S PP G L V L++RTT + LR FE+ G + + + D+ + Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116 >At5g03480.1 68418.m00304 expressed protein ; expression supported by MPSS Length = 321 Score = 27.9 bits (59), Expect = 3.0 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 195 LRRVFERCGEVGDIYIPRD 251 L + F CGE+ IY+PRD Sbjct: 44 LTKHFASCGEITQIYVPRD 62 Score = 27.9 bits (59), Expect = 3.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 195 LRRVFERCGEVGDIYIPRDRTQG 263 L + F+ CGE+ +Y+P D +G Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERG 155 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 27.9 bits (59), Expect = 3.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 245 +L V N+ T+ E L+ +F+R GEV I P Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 27.9 bits (59), Expect = 3.0 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +3 Query: 144 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 + + V L + T + +RR FE+ GE+ + + D+ G+ Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 27.5 bits (58), Expect = 3.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257 GR I+ L + NL Y ED++ +F GE+ + DR+ Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 122 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 27.5 bits (58), Expect = 3.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257 GR I+ L + NL Y ED++ +F GE+ + DR+ Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 58 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 27.5 bits (58), Expect = 3.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257 GR I+ L + NL Y ED++ +F GE+ + DR+ Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 124 >At5g03500.1 68418.m00306 transcriptional co-activator-related low similarity to transcriptional co-activator CRSP33 [Homo sapiens] GI:4220890 Length = 443 Score = 27.5 bits (58), Expect = 3.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 195 LRRVFERCGEVGDIYIPRDRTQG 263 L + F CG++ IY+PRD +G Sbjct: 227 LEKHFASCGKITHIYVPRDFERG 249 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T E L+ F GEV + I +DRT G+ Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T E L+ F GEV + I +DRT G+ Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45 >At1g47620.1 68414.m05289 cytochrome P450, putative similar to cytochrome P450 GI:4688670 from [Catharanthus roseus] Length = 520 Score = 27.5 bits (58), Expect = 3.9 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 145 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGHKG 264 W K I + TE++ LK +A F + EK++ + E+G +G Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 27.1 bits (57), Expect = 5.2 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT-QGK 266 S+ V L Y T E +RRVF G V + I DR+ +GK Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGK 47 >At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat family protein contains 6 (4 significant) WD-40 repeats (PF0400); nuclear protein HIRA, mouse, PIR:S68141 Length = 1051 Score = 27.1 bits (57), Expect = 5.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 321 WTRWTDECWTAGNFAXRWRDMVAP 392 W R D+C+ A NF+ W AP Sbjct: 807 WLRVADDCFPASNFSSSWNLGSAP 830 >At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 285 Score = 27.1 bits (57), Expect = 5.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 V L + T E LR+ FE+ GE+ + + D+ G+ Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 26.6 bits (56), Expect = 6.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T E LR F G+V + I RDR G+ Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 26.6 bits (56), Expect = 6.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T E LR F G+V + I RDR G+ Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 26.6 bits (56), Expect = 6.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T E LR F G+V + I RDR G+ Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45 >At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing protein Length = 809 Score = 26.6 bits (56), Expect = 6.8 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLKK 317 V +L + EDL++VF GEV ++ I ++ K + S F++V K+ Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 26.6 bits (56), Expect = 6.8 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272 V L + TT E L VFE GE+ + + D+ GK + Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 26.6 bits (56), Expect = 6.8 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272 V L + TT E L VFE GE+ + + D+ GK + Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145 >At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 26.2 bits (55), Expect = 9.0 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T+ + LR F GEV + I +DR G+ Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45 >At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 26.2 bits (55), Expect = 9.0 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L + +++ T+ + LR F GEV + I +DR G+ Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 26.2 bits (55), Expect = 9.0 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +3 Query: 135 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 +D + V L TT + + F + GE+ D I +DR G+ Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQ 81 >At5g37720.1 68418.m04541 RNA and export factor-binding protein, putative transcriptional coactivator ALY, Mus musculus, EMBL:MMU89876 Length = 288 Score = 26.2 bits (55), Expect = 9.0 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 L V NL T ED+R +F GEV I D+ Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK 128 >At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 411 Score = 26.2 bits (55), Expect = 9.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 L V +++ T + LR F GEV + RD+ G+ Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGR 45 >At3g50180.1 68416.m05486 hypothetical protein Length = 588 Score = 26.2 bits (55), Expect = 9.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 323 PGLLQRHDARKTSXRRILYFPLCPISGNVDITNFSAPFEN 204 PGLL HD K+ ++ F C I + DIT++ +N Sbjct: 437 PGLLI-HDGTKSLFLNLIAFEQCHIESSNDITSYIIFMDN 475 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,971,921 Number of Sequences: 28952 Number of extensions: 147056 Number of successful extensions: 411 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 411 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 645327280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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