Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0485
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 51 4e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 51 4e-07
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 41 3e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 7e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.004
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.008
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.008
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.019
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.045
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.045
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.059
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.078
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.18
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 32 0.18
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 32 0.18
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.24
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.32
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 0.32
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 0.32
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.32
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.32
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.55
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 0.55
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 0.55
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 0.55
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 0.55
At1g30680.1 68414.m03751 toprim domain-containing protein contai... 29 0.97
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 1.3
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 29 1.3
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 1.3
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 2.2
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 28 2.2
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 3.0
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 3.0
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 28 3.0
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 3.9
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 3.9
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 3.9
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 3.9
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 27 3.9
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 27 3.9
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 27 3.9
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 5.2
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 5.2
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 27 5.2
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 6.8
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 6.8
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 6.8
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 6.8
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 27 6.8
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 27 6.8
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 26 9.0
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 26 9.0
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 26 9.0
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 26 9.0
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 26 9.0
At3g50180.1 68416.m05486 hypothetical protein 26 9.0
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +3
Query: 114 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +3
Query: 114 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
SL V N+ PE+LR FER G V D+YIPRD G+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
SL V NL + EDLRR FE+ G V DIY+PRD G
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 39.9 bits (89), Expect = 7e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
SL V NL + EDLR+ FE+ G V DIY+PRD G
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V NLT+RTT +DLRR FE+ G+V D + + G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
P+ + +L V L+ RTT E LR F + GEV D + DR G
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
G L + NL P DLR FER G + DIY+PR+ G+
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
P G L V NL + +DLR+VFE G V + +PRD T
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDET 321
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.045
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 114 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 192 DLRRVFERCGEVGDIYIPRD 251
D R FER GE+ D+Y+P+D
Sbjct: 106 DFRSHFERYGEITDLYMPKD 125
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.045
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ G+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.5 bits (73), Expect = 0.059
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 105 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
K S G P +DG + + NL + TT D+R++F C + + + +++ G+
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.1 bits (72), Expect = 0.078
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272
+Y PP ++ V NL T E+L++ F + GEV + IP + G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
S+ V N+ Y TPE++++ F+ CG V + I D+
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 138
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.5 bits (68), Expect = 0.24
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L + NL ++ P D++ VF G V D++IP++ G
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYI---PRDRTQGKV 269
L N+ + +TPED+R +FE+ G V DI + ++R +G V
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLV 137
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
S+ V N+ Y TPE++++ F+ CG V + I D+
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK 127
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
S+ V N+ Y TPE+++ F+ CG V + I D+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
S+ V N+ Y TPE+++ F+ CG V + I D+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 189 EDLRRVFERCGEVGDIYIPRDRTQG 263
++LR F +CGEV +++P DR G
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDI 236
G +L NL+Y+ D+ F+ GEV D+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDV 413
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 0.55
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 111 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
SY R P + V L + T +++RR F++ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At1g30680.1 68414.m03751 toprim domain-containing protein contains
Pfam profile: PF01751 toprim domain
Length = 709
Score = 29.5 bits (63), Expect = 0.97
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 219 GEVGDIYIPRDRTQGKVEDSP 281
G++GD Y+ DRT G DSP
Sbjct: 675 GQIGDAYLCYDRTTGSYSDSP 695
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 1.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 192 DLRRVFERCGEVGDIYIPRDR 254
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 63 LFNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 242
L NL L + + + G PP + G+VSLK +L+ ++ + F G + I +
Sbjct: 261 LSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINL 320
Query: 243 PRDRTQGKVEDS 278
R+ G++ ++
Sbjct: 321 FRNNLYGQIPEA 332
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 111 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR G V+
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V + + T DL VF + GE+ D+ + RD+ GK
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
S L S PP G L V L++RTT + LR FE+ G + + + D+ +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 195 LRRVFERCGEVGDIYIPRD 251
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 195 LRRVFERCGEVGDIYIPRDRTQG 263
L + F+ CGE+ +Y+P D +G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERG 155
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 245
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 144 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+ + V L + T + +RR FE+ GE+ + + D+ G+
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 122
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 58
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 124
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 195 LRRVFERCGEVGDIYIPRDRTQG 263
L + F CG++ IY+PRD +G
Sbjct: 227 LEKHFASCGKITHIYVPRDFERG 249
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T E L+ F GEV + I +DRT G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T E L+ F GEV + I +DRT G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 145 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGHKG 264
W K I + TE++ LK +A F + EK++ + E+G +G
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT-QGK 266
S+ V L Y T E +RRVF G V + I DR+ +GK
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGK 47
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 321 WTRWTDECWTAGNFAXRWRDMVAP 392
W R D+C+ A NF+ W AP
Sbjct: 807 WLRVADDCFPASNFSSSWNLGSAP 830
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L + T E LR+ FE+ GE+ + + D+ G+
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T E LR F G+V + I RDR G+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T E LR F G+V + I RDR G+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T E LR F G+V + I RDR G+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLKK 317
V +L + EDL++VF GEV ++ I ++ K + S F++V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272
V L + TT E L VFE GE+ + + D+ GK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 272
V L + TT E L VFE GE+ + + D+ GK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T+ + LR F GEV + I +DR G+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L + +++ T+ + LR F GEV + I +DR G+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 135 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+D + V L TT + + F + GE+ D I +DR G+
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQ 81
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
L V NL T ED+R +F GEV I D+
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK 128
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
L V +++ T + LR F GEV + RD+ G+
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGR 45
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 323 PGLLQRHDARKTSXRRILYFPLCPISGNVDITNFSAPFEN 204
PGLL HD K+ ++ F C I + DIT++ +N
Sbjct: 437 PGLLI-HDGTKSLFLNLIAFEQCHIESSNDITSYIIFMDN 475
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,971,921
Number of Sequences: 28952
Number of extensions: 147056
Number of successful extensions: 411
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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