BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0482 (706 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 42 9e-05 SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 27 3.5 SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.0 SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 25 8.0 >SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 445 Score = 41.9 bits (94), Expect = 9e-05 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Frame = -2 Query: 705 PLVTTDEGDKFGKSAGKCIVVGFSKNKSI*FVSIFHS---NQRC*CRATVEAIYFLQLRR 535 PL+T+ G K GKSAG I + S F S + C C + + QL + Sbjct: 236 PLLTSSSGQKLGKSAGNAIWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQLEQ 295 Query: 534 DQRYHV*T*QHPDQRYPQQCLAEQLTTLVHGKDGLAQAQRATSAIY 397 + H + P QR + LA + +VHGK L AQ T ++ Sbjct: 296 IKAEHE---KDPSQRIVHKYLASNVVRMVHGKKALELAQIQTKLLH 338 Score = 41.9 bits (94), Expect = 9e-05 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -3 Query: 656 NALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKHD 507 NA+WLD T +SLYQYFI D + L + T L ++ I +H+ Sbjct: 252 NAIWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQLEQIKAEHE 301 >SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 26.6 bits (56), Expect = 3.5 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -3 Query: 176 NTISTHTTKSNITLKD 129 N ++TH TK N+T+KD Sbjct: 1037 NILTTHATKDNLTVKD 1052 >SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 25.4 bits (53), Expect = 8.0 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +2 Query: 251 IPVGKHLAFIPSSKTVIPGDNNKLVTGAPSKT-FSNSSLF 367 IPV +F+P T P ++V P+ + FS S F Sbjct: 310 IPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYFSPGSSF 349 >SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 399 Score = 25.4 bits (53), Expect = 8.0 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -3 Query: 248 CHENYRSR-WILHQSSENKEN**GHNTISTHTTKSN 144 C +Y++ WIL E + N G+ +S+ T KSN Sbjct: 177 CSNDYKNALWILCLIKETQHNEMGNIKLSSQTAKSN 212 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,873,757 Number of Sequences: 5004 Number of extensions: 58827 Number of successful extensions: 169 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 168 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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