Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0482
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    42   9e-05
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   3.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.0  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   8.0  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
 Frame = -2

Query: 705 PLVTTDEGDKFGKSAGKCIVVGFSKNKSI*FVSIFHS---NQRC*CRATVEAIYFLQLRR 535
           PL+T+  G K GKSAG  I +      S      F S   +  C C   +  +   QL +
Sbjct: 236 PLLTSSSGQKLGKSAGNAIWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQLEQ 295

Query: 534 DQRYHV*T*QHPDQRYPQQCLAEQLTTLVHGKDGLAQAQRATSAIY 397
            +  H    + P QR   + LA  +  +VHGK  L  AQ  T  ++
Sbjct: 296 IKAEHE---KDPSQRIVHKYLASNVVRMVHGKKALELAQIQTKLLH 338



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 656 NALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKHD 507
           NA+WLD   T  +SLYQYFI   D    + L + T   L ++  I  +H+
Sbjct: 252 NAIWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQLEQIKAEHE 301


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 176  NTISTHTTKSNITLKD 129
            N ++TH TK N+T+KD
Sbjct: 1037 NILTTHATKDNLTVKD 1052


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 251 IPVGKHLAFIPSSKTVIPGDNNKLVTGAPSKT-FSNSSLF 367
           IPV    +F+P   T  P    ++V   P+ + FS  S F
Sbjct: 310 IPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYFSPGSSF 349


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 248 CHENYRSR-WILHQSSENKEN**GHNTISTHTTKSN 144
           C  +Y++  WIL    E + N  G+  +S+ T KSN
Sbjct: 177 CSNDYKNALWILCLIKETQHNEMGNIKLSSQTAKSN 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,757
Number of Sequences: 5004
Number of extensions: 58827
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)