Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0482
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0025 + 17298734-17299669 51 8e-07
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 29 3.6
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 29 3.6
05_04_0263 + 19534563-19535522 29 4.8
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 28 6.3
08_01_0354 - 3113931-3113933,3114229-3114244,3114343-3114542,311... 28 8.3
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 28 8.3
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 8.3
>01_05_0025 + 17298734-17299669
Length = 311
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -3
Query: 683 GISLESLQENALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDI 522
G ++ A+WL SP+ YQYF D DV R +K+ TF SL EI+++
Sbjct: 116 GTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQEL 169
Score = 34.7 bits (76), Expect = 0.072
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = -2
Query: 705 PLVTTDEGDKFGKSAGKCIVVGFSKNKSI*FVSIFHSNQRC*CRATVEAIYFLQLRRDQR 526
PL+ +G KFGK+ I + F F S ++ + F+ L Q
Sbjct: 109 PLLLKSDGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQE 168
Query: 525 YHV*T*QHPDQ--RYPQQCLAEQLTTLVHGKDGLAQAQRATSAI 400
+ + P Q+ LAE++T VHG++GL +A +AT A+
Sbjct: 169 LEE-SMKKPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEAL 211
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = -1
Query: 241 RIIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIVK 101
R+I+ GG Y+N+ +I D+++ + ++ + LL GK+N +V+
Sbjct: 264 RLIKQGGLYLNNIRIDSEDKLV-EEGDVVDGKVLLLSAGKKNKMVVR 309
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 484 WIPLIRMLSCLYMISLISPKL*KVNSFNSRSTSASLV 594
WI L+ +S L + L+ P+L ++ SR SL+
Sbjct: 646 WISLVSSVSVLLAVPLVFPRLIPIHDLTSRGDDESLI 682
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 293 TVIPGDNNKLVTGAPSKTFSNSSLFNETNDLISL 394
T+IP D L T +FSN+ FN+ ND+ L
Sbjct: 397 TLIPSDGAVLSTEFEESSFSNNHHFNKDNDIRQL 430
>05_04_0263 + 19534563-19535522
Length = 319
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 611 YQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKHDSIRIKGIHSSV-WL 468
++YF + D+E L++ F++ G + +H+ + KG S+ WL
Sbjct: 210 FEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAWL 258
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 256 WNDAMRIIEAGGFYINHQKIKKIDEVITQSAHILPNL 146
W++ I +A GF + HQK KK E I Q + PNL
Sbjct: 1328 WHELNYIRQAVGFLVIHQKRKKTLEEIRQD--LCPNL 1362
>08_01_0354 -
3113931-3113933,3114229-3114244,3114343-3114542,
3114653-3114731,3114844-3115209,3115557-3115773,
3116455-3116593,3116958-3117228,3117986-3118095,
3118967-3119122
Length = 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 253 NDAMRIIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIV 104
N MR++EA G Y Q +D + QS L+++ + +YYIV
Sbjct: 248 NHNMRLVEAEGTYTYQQNYTNLDIHVGQSYSF---LVTMDQNASTDYYIV 294
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 471 AEQLTTLV-HGKDGLAQAQRATSAIYSKDIKSLVSLKSDELEKVFEGAPVTSLLLSPGIT 295
A+ L++L+ HG+ +R+ + D+ L+ LK+D++ + APV ++L S +T
Sbjct: 1315 ADGLSSLIAHGQLKELDVRRSPNFFVGSDLSLLLQLKTDDITWLLV-APVCNILAS-SLT 1372
Query: 294 VLELG 280
L +G
Sbjct: 1373 ELTIG 1377
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 256 WNDAMRIIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTG 125
W++ I +A GF + HQK K E IT + ++ + R G
Sbjct: 1587 WDEFQHIRQAVGFLVLHQKTHKTLEEITDELCPVLSITQIYRIG 1630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,123
Number of Sequences: 37544
Number of extensions: 336225
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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