Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0482
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)                54   1e-07
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)                 30   1.6  
SB_8567| Best HMM Match : EB (HMM E-Value=2.3)                         30   1.6  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)
          Length = 252

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 33/47 (70%)
 Frame = -3

Query: 650 LWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKH 510
           +WLD+ +TSP+  YQY++ + D D E+ +K+FTF S  EI  ++ +H
Sbjct: 188 VWLDANRTSPYKFYQYWLNSSDEDSEKYIKIFTFLSQKEIETLIAEH 234


>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
          Length = 557

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 233 YNSHGIIPVGKHLAFIPSSKTVIPGDNNKL 322
           Y+S GI+ V +H + +P SK++  G+N +L
Sbjct: 98  YHSKGILNVNEHRSNVPKSKSLKRGNNRRL 127


>SB_8567| Best HMM Match : EB (HMM E-Value=2.3)
          Length = 179

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 487 IPLIRMLSCLYMISLISPKL*KVNSFNSRSTSASLVRMKY*YK 615
           IP+  +  CL M +++   L  +N+   R T   +V++KY +K
Sbjct: 46  IPVFHLFVCLDMSAILQVTLMAINALAKRGTREHIVKVKYLHK 88


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 281 PSSKTVIPGDNNKLVTGAPSKTFSNSSLFNET 376
           PSSK  +   N KLV G PS++  + SL + +
Sbjct: 6   PSSKLTLTKGNRKLVPGPPSRSTVSISLISNS 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,392,966
Number of Sequences: 59808
Number of extensions: 392430
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)