Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0482
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna ...    55   4e-08
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    55   4e-08
AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC024752-1|AAF59431.1|   90|Caenorhabditis elegans Hypothetical ...    29   4.3  

>U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform b protein.
          Length = 327

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/50 (48%), Positives = 31/50 (62%)
 Frame = -3

Query: 653 ALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKHDS 504
           ALWLD+ KTSPF  YQ+F +  D   E LL LF+   +  IRD++  H S
Sbjct: 145 ALWLDATKTSPFHFYQFFAQLHDDKAEELLLLFSLQDIEHIRDVLKNHRS 194



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -2

Query: 483 QQCLAEQLTTLVHGKDGLAQAQRATSAIYSKDIKSLVSLKSDELEKVF 340
           Q+ LA ++T +VHGK+GL  A R T A++      L  L   E+ ++F
Sbjct: 202 QRELAAEITRIVHGKEGLEVAMRCTKAMFGAKKADLSGLSRSEVLQLF 249



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 238 IIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIVKW 98
           +++ G F +N +K +   E I        + ++L+  GKR Y +V+W
Sbjct: 280 LMQQGAFSVNGEKKRSPSESIADVFLENASDLTLVCWGKRGYQLVRW 326


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/50 (48%), Positives = 31/50 (62%)
 Frame = -3

Query: 653 ALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIRDIMYKHDS 504
           ALWLD+ KTSPF  YQ+F +  D   E LL LF+   +  IRD++  H S
Sbjct: 265 ALWLDATKTSPFHFYQFFAQLHDDKAEELLLLFSLQDIEHIRDVLKNHRS 314



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -2

Query: 483 QQCLAEQLTTLVHGKDGLAQAQRATSAIYSKDIKSLVSLKSDELEKVF 340
           Q+ LA ++T +VHGK+GL  A R T A++      L  L   E+ ++F
Sbjct: 322 QRELAAEITRIVHGKEGLEVAMRCTKAMFGAKKADLSGLSRSEVLQLF 369



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 238 IIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIVKW 98
           +++ G F +N +K +   E I        + ++L+  GKR Y +V+W
Sbjct: 400 LMQQGAFSVNGEKKRSPSESIADVFLENASDLTLVCWGKRGYQLVRW 446


>AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical
           protein M70.4 protein.
          Length = 822

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 179 DLINFLYFLMIDVESTGFYNSHGIIPVGKHLAFIPSSKTVI 301
           DL++  +   + ++S G YN+H ++ +    +  P + +V+
Sbjct: 553 DLVSLFHVKSVAIQSNGSYNAHLLLSLSNAFSIFPDASSVL 593


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 208 HQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIVKWQT 92
           H+K+  ID ++  S  ++PN+ SL         IV+++T
Sbjct: 170 HRKVPTIDSILKYSLSLMPNVASLPSAAALTETIVRFRT 208


>AC024752-1|AAF59431.1|   90|Caenorhabditis elegans Hypothetical
           protein Y1B5A.1 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 501 PDQRYPQQCLAEQLTTLVHGKDGLAQAQRATSAIYSKDIKSL 376
           PD    +    EQ TTLVHG+     A   T  + S  I SL
Sbjct: 22  PDTEVSRSVEIEQWTTLVHGEIPAVAASDKTRKVQSNQIPSL 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,300
Number of Sequences: 27780
Number of extensions: 319951
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)