Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0482
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.53 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 245 HENYRSRWILHQSSENKEN**GHNTISTHTTKSN 144
           H N+      H S  + +N   HN  + H++KSN
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSN 457


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 665 LQENALWLDSAKTSPFSLYQYFIRTKDADVERLLKL 558
           L+E  L ++S K     +YQ F+R      +   +L
Sbjct: 350 LEEAVLRIESVKKEDKGMYQCFVRNDQESAQATAEL 385


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 182 GHNTISTHTTKSNITL 135
           G NTI   +TKS++T+
Sbjct: 538 GKNTIEQKSTKSSVTI 553


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 182 LINFLYFLMIDVESTGFYNSHGIIPVGKHLAFIPSSKTVIPGDNN 316
           +I F Y   I     G  N   ++  G+   F+PS  +++  DN+
Sbjct: 264 VIEFKYSYEISNAFRGNNNLKWLVNWGEQWGFLPSKDSLVFVDNH 308


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 365 RVMSWKKFSKVLPLLVYYYHL 303
           R M WKK  K+  + +  YH+
Sbjct: 59  RRMKWKKEHKMASMNIVPYHM 79


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 173 TISTHTTKSNITLKDWET*LLYCEMANIIIVYFDF 69
           T++T  T  +  L +W+   +Y     I + YF F
Sbjct: 128 TLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPF 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,995
Number of Sequences: 438
Number of extensions: 4092
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)