Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0482
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    50   1e-06
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    29   4.0  
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR...    29   4.0  
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th...    29   4.0  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    28   5.2  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    28   6.9  
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4...    28   6.9  
At5g19100.1 68418.m02272 extracellular dermal glycoprotein-relat...    27   9.2  

>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = -3

Query: 683 GISLESLQENALWLDSAKTSPFSLYQYFIRTKDADVERLLKLFTFYSLGEIR 528
           G      ++ A+WL  +  SP+  YQYF    D DV R LK  TF SL EI+
Sbjct: 316 GTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDVDVIRFLKTLTFLSLDEIK 367



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
 Frame = -2

Query: 705 PLVTTDEGDKFGKSAGKCIVVGFSKNKSI*FVSIFHSNQRC*CRATVEAIYFLQLRRDQR 526
           PL+  ++G KFGKS    I +  S      F   F S         ++ + FL L     
Sbjct: 309 PLLLKNDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDVDVIRFLKTLTFLSL---DE 365

Query: 525 YHV*T*QHPDQRY----PQQCLAEQLTTLVHGKDGLAQAQRATSAIYSKDIKSLVSLKSD 358
             +   Q     Y     Q  LAE++T  VHG++GL +A +AT A+      +   L  +
Sbjct: 366 IKILEDQMSKPGYVPNTAQIKLAEEVTRFVHGEEGLKEAIKATEALRP---GAETKLDWN 422

Query: 357 ELEKVFEGAPVTSLLLS--PGITVLELGMKAKCF 262
            +E++ E  P  SL +    G+++++L + A  F
Sbjct: 423 LIERIAEDIPSCSLPIDRVSGLSIVDLSVSAGLF 456



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = -1

Query: 247 AMRIIEAGGFYINHQKIKKIDEVITQSAHILPNLISLLRTGKRNYYIVK 101
           A R+++ GGFY+N++++   ++ + +   I+     +L  GK+N  +V+
Sbjct: 462 ARRMLKQGGFYMNNERVDDENKRVDEE-DIVEGRGLVLSAGKKNKVVVR 509


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 408 SAIYSKDIKSLVSLKSDELEKVFEGAPVTSLLLSPGITVLEL 283
           S +Y K+++ L   K+D  E   +G      +LSP +T+LEL
Sbjct: 776 SNLYFKNVRELSMGKADSDENKCQGVKPFMPMLSPTLTLLEL 817


>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 408 SAIYSKDIKSLVSLKSDELEKVFEGAPVTSLLLSPGITVLEL 283
           S +Y K+++ L   K+D  E   +G      +LSP +T+LEL
Sbjct: 737 SNLYFKNVRELSMGKADSDENKCQGVKPFMPMLSPTLTLLEL 778


>At4g34570.1 68417.m04912 bifunctional dihydrofolate
           reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
           identical to SP|Q05763
          Length = 565

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 359 MSWKKFSKVLPLLVYYYHLE*QF*NL 282
           + WKKFS VLP +++  H E  + NL
Sbjct: 263 VDWKKFSSVLPKMIFDRHEEYLYLNL 288


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 256  WNDAMRIIEAGGFYINHQKIKK-IDEVITQSAHIL 155
            W++   I +A GF + HQK KK +DE+  +   +L
Sbjct: 1414 WDELRHIRQAVGFLVIHQKPKKTLDEITRELCPVL 1448


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 411 LLFVLGLIHPFHAPESLAAQPDTAVDTF 494
           L F+LGL + FH+P  +  QP ++ ++F
Sbjct: 37  LAFLLGLHNGFHSPGFVTVQPASSFESF 64


>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
            from (Arabidopsis thaliana)
          Length = 1520

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 256  WNDAMRIIEAGGFYINHQKIKK-IDEVITQSAHIL 155
            W++   I +A GF + HQK KK + E+ T+   +L
Sbjct: 1393 WDELKHIRQAVGFLVIHQKPKKSLKEITTELCPVL 1427


>At5g19100.1 68418.m02272 extracellular dermal glycoprotein-related
           / EDGP-related low similarity to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741,
           SP|P13917 Basic 7S globulin precursor {Glycine max}
          Length = 391

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 419 CAWANPSFPCTRVVSCSARHCC 484
           C +ANP+FPC   V    R  C
Sbjct: 90  CKYANPNFPCPNNVIAKKRTVC 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,339
Number of Sequences: 28952
Number of extensions: 290891
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)