Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0481
(747 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 187 2e-46
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 185 1e-45
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 154 8e-41
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 165 1e-39
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 151 2e-35
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 144 2e-33
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 140 4e-32
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 134 2e-30
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 121 2e-26
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 119 7e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 113 4e-24
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 90 5e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 85 2e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 79 1e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 76 1e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 73 8e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 71 4e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 66 1e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 64 3e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 61 3e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 58 3e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 57 5e-07
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 56 9e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 2e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 4e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 5e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 51 3e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 47 4e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 46 0.001
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 41 0.028
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.049
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.065
UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein P0419B... 38 0.20
UniRef50_UPI0000E49AD9 Cluster: PREDICTED: hypothetical protein;... 34 3.2
UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein... 33 7.5
UniRef50_A6UL31 Cluster: Extracellular solute-binding protein fa... 33 9.9
UniRef50_Q0E050 Cluster: Os02g0578000 protein; n=2; Oryza sativa... 33 9.9
UniRef50_Q0D9D2 Cluster: Os06g0726200 protein; n=2; cellular org... 33 9.9
UniRef50_Q9HNB2 Cluster: DNA repair protein; n=6; Halobacteriace... 33 9.9
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.9
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 187 bits (456), Expect = 2e-46
Identities = 90/162 (55%), Positives = 109/162 (67%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RT
Sbjct: 87 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIKVND+IQ+D+ T KI D G G P
Sbjct: 147 IRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFD 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + G++FATRL+N+F+IGKG K +ISLPRGKGIRLTI
Sbjct: 207 VVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTI 248
Score = 155 bits (377), Expect = 8e-37
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KI QR IK+DGKVRTD TYPAG
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPAG 85
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 185 bits (450), Expect = 1e-45
Identities = 90/162 (55%), Positives = 106/162 (65%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRT
Sbjct: 87 MDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLI NDS+Q+DIA+ KI D G G P
Sbjct: 147 IRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFD 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + GH FATRL NVFIIGKG K YISLP+GKG++L+I
Sbjct: 207 IVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSI 248
Score = 163 bits (395), Expect = 5e-39
Identities = 76/93 (81%), Positives = 81/93 (87%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV
Sbjct: 2 ARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGLWXLSQLRR 279
KIV QRL+KVDGKVRTDPTYPAG + L +
Sbjct: 62 TKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 154 bits (373), Expect = 3e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KI QR IK+DGKVRTD TYP G
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTG 85
Score = 129 bits (312), Expect(2) = 8e-41
Identities = 62/129 (48%), Positives = 81/129 (62%)
Frame = +3
Query: 354 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGT 533
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI D
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 534 CV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLP 713
G P + + TG++FATRL+N+F+IGKG K ++SLP
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLP 271
Query: 714 RGKGIRLTI 740
RGKGIRLTI
Sbjct: 272 RGKGIRLTI 280
Score = 60.9 bits (141), Expect(2) = 8e-41
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 356
MD +SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 87 MDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 165 bits (401), Expect = 1e-39
Identities = 84/162 (51%), Positives = 102/162 (62%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD VSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIK ND+I+LD+ KI++ G V G
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ TGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 207 TIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248
Score = 143 bits (347), Expect = 4e-33
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 69.3 bits (162), Expect = 9e-11
Identities = 32/57 (56%), Positives = 41/57 (71%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSNGTHLRHEVEQRVHN 679
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DS G HE R+ N
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTG----HEFATRLGN 224
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 151 bits (366), Expect = 2e-35
Identities = 73/145 (50%), Positives = 92/145 (63%)
Frame = +3
Query: 306 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 485
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 486 IATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPTGHTFATRLN 665
+ T KI D G G + P + + G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 666 NVFIIGKGTKAYISLPRGKGIRLTI 740
N+F+IGKG +ISLP GKGIR TI
Sbjct: 196 NIFVIGKGNIPWISLPHGKGIRFTI 220
Score = 124 bits (298), Expect = 3e-27
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 AHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGK 222
KI Q IK+DGK
Sbjct: 62 KKIRMQHFIKMDGK 75
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 144 bits (349), Expect = 2e-33
Identities = 68/163 (41%), Positives = 99/163 (60%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD V IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TIR+P+P IK+ D+++ D+ KI + + L G ++ G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+C + G+ FATRL N+F++G+G K++I LP G G+R TI
Sbjct: 318 DICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETI 360
Score = 87.0 bits (206), Expect = 4e-16
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 31/129 (24%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 93
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 94 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGLWXLS 267
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP GL +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 268 QLRRLMNCF 294
++ + F
Sbjct: 203 RIEKTDQSF 211
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 140 bits (338), Expect = 4e-32
Identities = 69/160 (43%), Positives = 101/160 (63%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD +SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TIR+P+ LIK NDSI LD+ K++D S G+ + G
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSD 205
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIR 731
++ + G +F+T+ N+F+IGKGTK++ISLPR +G+R
Sbjct: 206 SIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLPRFRGLR 245
Score = 113 bits (272), Expect = 4e-24
Identities = 50/92 (54%), Positives = 68/92 (73%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 2 SRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGLWXLSQLR 276
L I+K+ I VDGKVR D +PAG+ + ++
Sbjct: 62 LNILKKNEIYVDGKVRADKNFPAGVMDVISIK 93
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 134 bits (324), Expect = 2e-30
Identities = 59/98 (60%), Positives = 70/98 (71%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 2 ARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGLWXLSQLRRLMNCF 294
IVK R IK+DGK+RTD YP G + + R F
Sbjct: 62 TMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 134 bits (324), Expect = 2e-30
Identities = 67/159 (42%), Positives = 95/159 (59%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRT
Sbjct: 87 MDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYP P ++ ND+I+L++ T KI+D G G P
Sbjct: 147 IRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFE 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIR 731
+ + G+TF TRLNNVF+IGKGT+ ++LP KGI+
Sbjct: 207 IVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGIK 245
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 121 bits (292), Expect = 2e-26
Identities = 60/82 (73%), Positives = 66/82 (80%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV
Sbjct: 13 AFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEV 71
Query: 181 LKIVKQRLIKVDGKVRTDPTYP 246
KI Q IKVDGK+RTD P
Sbjct: 72 KKICMQWFIKVDGKIRTDNNLP 93
Score = 120 bits (290), Expect = 3e-26
Identities = 64/158 (40%), Positives = 89/158 (56%)
Frame = +3
Query: 240 LSCWIMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 419
L WIMD +SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 420 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDI 599
HD T+R+PD LIKVND+IQ+D+ T KI + C+ + WG
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKITALKFDTGNLCLVTGGG-NWGRIGVITNRERH 210
Query: 600 PAPSTLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLP 713
P + ++F+ +F+I KG K +ISLP
Sbjct: 211 PVSFDTFHVKDANSNSFSI----IFVIDKGNKPWISLP 244
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 119 bits (287), Expect = 7e-26
Identities = 56/92 (60%), Positives = 67/92 (72%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 199 RLIKVDGKVRTDPTYPAGLWXLSQLRRLMNCF 294
RL+KVDGKVRT+ YP GL + +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 119 bits (287), Expect = 7e-26
Identities = 60/163 (36%), Positives = 91/163 (55%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD + + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TI Y DP ++V+D+++ +I T ++ G G A
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASF 219
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + +G FATR+ NVF+IG+ ISLP +G+R +I
Sbjct: 220 DIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPAREGVRPSI 262
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 113 bits (272), Expect = 4e-24
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 192
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 193 KQRLIKVDGKVRTDPTYPAGLWXLSQL 273
+Q L+ VD R D YPAG + ++
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 105 bits (251), Expect = 2e-21
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD V I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 84 MDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHR 143
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDP + D+I ++ K +D G V G P
Sbjct: 144 IRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFN 203
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKG-TKAYISLPRGKGIRLTI 740
+ + +G FATR N+F+IGK +++P+ +G+R+ +
Sbjct: 204 IAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQGLRMNV 246
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 90.2 bits (214), Expect = 5e-17
Identities = 40/91 (43%), Positives = 60/91 (65%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 187 IVKQRLIKVDGKVRTDPTYPAGLWXLSQLRR 279
I+ ++ IKV+G+VRT+ +P GL+ + + +
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 79.8 bits (188), Expect = 7e-14
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ D VSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
+IR+ DP I + +I++ T+K+++ P + G
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGR-VGVINTISTQGKE 203
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTK-AYISLPRGKGIR 731
T+ G+TF+ + +IG+ ++ +I+LP+ +GIR
Sbjct: 204 TVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIR 244
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 84.6 bits (200), Expect = 2e-15
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGLWXLSQLRR 279
KI+ + I VDG VR +P +P G+ + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 43.6 bits (98), Expect = 0.005
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Frame = +3
Query: 234 PYLSCWIMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 413
P IMD V I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 414 VTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMDSSSLSPGTCV*SRE 551
HDG+ + DP + V DS+ L++ + K++D G V +
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMT 203
Query: 552 AVTWGAWAPSCPARDIPAP-STLCTSRTPTGHTFATRLNNVFIIGK 686
G + P L T P G F T + IGK
Sbjct: 204 GRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK 249
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 79.0 bits (186), Expect = 1e-13
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGL 255
KI++ I +DG R + +PAGL
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGL 87
Score = 33.5 bits (73), Expect = 5.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 506 GFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSNG 640
G + F G L ITGG+++G IV E DIV +++ +G
Sbjct: 178 GHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDG 222
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 19 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 196 QRLIKVDGKVRTDPTYPAGLWXLSQL 273
+ +KVDG VR D +P GL + ++
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
Score = 35.9 bits (79), Expect = 1.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD + I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 432 ---TIRYPDPLIKVNDSIQLDIATTKI 503
T IK DS+ D+ I
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAI 168
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 72.9 bits (171), Expect = 8e-12
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 199 RLIKVDGKVRTDPTYPAGLWXLSQL 273
+KVDGKVR D YP GL + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 37.9 bits (84), Expect = 0.26
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 4/149 (2%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD + + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 432 TI---RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCP-ARDI 599
I + + S+ +++ K+MD + P V + V G R
Sbjct: 141 NIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSF 200
Query: 600 PAPSTLCTSRTPTGHTFATRLNNVFIIGK 686
+ T + F T LN + +IGK
Sbjct: 201 RKRDAIATVKAKDSE-FRTVLNYLLVIGK 228
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGL 255
+I+ R+I+VDG+V TD +P GL
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGL 89
Score = 38.7 bits (86), Expect = 0.15
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD + I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 432 TI 437
+
Sbjct: 149 NV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 187 IVKQRLIKVDGKVRTDPTYPAG 252
++ + +VDG VR D +P G
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVG 86
Score = 38.7 bits (86), Expect = 0.15
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 GFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSNG 640
G IKF G + +I GGRN+GRVG + S ++ G +V ++D++G
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASG 225
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 199 RLIKVDGKVRTDPTYPAGLW 258
+ VDGKVR D Y G++
Sbjct: 65 GKVLVDGKVRKDYRYTVGMF 84
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/89 (31%), Positives = 44/89 (49%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 187 IVKQRLIKVDGKVRTDPTYPAGLWXLSQL 273
I+ + VDG+V D +P G + ++
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/95 (32%), Positives = 48/95 (50%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD + I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+
Sbjct: 88 MDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKN 145
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 539
+ + V D I L + +I + L G CV
Sbjct: 146 VIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/85 (36%), Positives = 44/85 (51%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 199 RLIKVDGKVRTDPTYPAGLWXLSQL 273
+ VDGKVR D YP GL + ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
Score = 39.5 bits (88), Expect = 0.086
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD V I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 432 TIRYP-DPLIKVN----DSIQLDIATTKIMDSSSLSPGT---CV*SREAVTWGAWAPSCP 587
I + L + N ++++++ KI + ++ G + R A G +
Sbjct: 141 NILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQL 200
Query: 588 ARDIPAPSTLCTSRTPTGHTFATRLNNVFIIGK 686
A+ +L T G TF T L NV IG+
Sbjct: 201 AKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 199 RLIKVDGKVRTDPTYPAGL 255
R + VDG++ TD GL
Sbjct: 65 RQVLVDGRIETDLGRGVGL 83
Score = 38.7 bits (86), Expect = 0.15
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD +++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 432 TIRYPD-PLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAP 608
I D L D++ + + + S G G A +RDI
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITA-KVVSRDIKRS 199
Query: 609 STLCTSRTPTGHTFATRLNNVFIIG 683
S + P F T + VFIIG
Sbjct: 200 SKPNEVQFP---DFGTVADYVFIIG 221
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 56.0 bits (129), Expect = 9e-07
Identities = 28/85 (32%), Positives = 43/85 (50%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 199 RLIKVDGKVRTDPTYPAGLWXLSQL 273
+ VDG R D +P GL+ + L
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.8 bits (126), Expect = 2e-06
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Frame = +3
Query: 270 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 449
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 450 PLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWA-PSCPARDIPAPSTLCTS 626
KV D + + KI + + PG ++ +T G+ + I A +
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG----NKAYITAGSHVNQTGTISKIEAKEGSSAN 201
Query: 627 RTPTGHTFATRLNNVFIIGKGTKAYISLP 713
F+T ++VF+IG +++ P
Sbjct: 202 LVHFQEGFSTIKDHVFMIGSSKFSFVLSP 230
Score = 37.5 bits (83), Expect = 0.35
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 205 IKVDGKVRTDPTYPAGLWXLSQL 273
+KVDGK + + G + ++
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 199 RLIKVDGKVRTDPTYPAGL 255
+ VDG R D +P GL
Sbjct: 64 GNVLVDGVARKDLRFPVGL 82
Score = 33.1 bits (72), Expect = 7.5
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 512 IKFESGNLCMITGGRNLGRVGTI 580
IK+E GNL MI GG + G VG+I
Sbjct: 167 IKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 189
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 190 VKQRLIKVDGKVRTDPTYPAGLW 258
+ + VDG+ D +P GL+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLF 88
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 205 IKVDGKVRTD 234
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 196 QRLIKVDGKVRTDPTYPAGLWXLSQLRRL 282
QR + V+G+ D G++ + + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 39.9 bits (89), Expect = 0.065
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ D VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 432 TIRYPDPLIKVNDSIQLDIAT 494
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.4 bits (110), Expect = 2e-04
Identities = 31/153 (20%), Positives = 63/153 (41%)
Frame = +3
Query: 252 IMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
++ IKV DS+ + +I+ + G+ G A R +
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLR 205
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTKAYISL 710
+ G + +++ +IG+ + +SL
Sbjct: 206 KMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238
Score = 42.3 bits (95), Expect = 0.012
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 2 AKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEA 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGL 255
K+VK + V+GK +P L
Sbjct: 62 QKVVKTGFLYVNGKKCLSHKFPISL 86
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 199 RLIKVDGKVRTDPTYPAGLWXL 264
+ ++GK +D P G++ +
Sbjct: 63 DNVLINGKAISDEERPVGMFDI 84
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/91 (23%), Positives = 45/91 (49%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 205 IKVDGKVRTDPTYPAGLWXLSQLRRLMNCFV 297
+KVDG++ D +P G + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 38.7 bits (86), Expect = 0.15
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGR 431
MD +SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+
Sbjct: 84 MDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGK 142
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 530
TI I +D + + I +I + ++ G
Sbjct: 143 TIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 41.1 bits (92), Expect = 0.028
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 196 QRLIKVDGKVRTDPTYPAGLWXLSQL 273
++VDG RT + GL + +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.3 bits (90), Expect = 0.049
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 1/162 (0%)
Frame = -2
Query: 740 DGEADPLAARQRDVRLRALADYEHVVQPRGEGVSRWSP*CAQCRRSRDVSRGTRWCPRAP 561
DGE D LA +RD RL A D EHV + R + ++ DV P A
Sbjct: 33 DGELDTLALGKRDHRLVARTDGEHVRRARRKLLTG-GVLQVHNFEGTDVLLAALDHPDAT 91
Query: 560 SYGLP*SYTSSR-TQT**IHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGR 384
+ S + I +L +V +G+ D + + +GAA+++ R+ L
Sbjct: 92 GVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPEL 151
Query: 383 HTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DXI 258
QLVL D V ES+L ++D + FI+L + D +
Sbjct: 152 LAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = -3
Query: 649 KVCPVGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLD 512
K+ GVL VHN EG + LA D A V + DH Q ++LD
Sbjct: 63 KLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELD 108
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.065
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 205 IKVDGKV 225
+ VDGKV
Sbjct: 66 VMVDGKV 72
Score = 33.9 bits (74), Expect = 4.3
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 1/154 (0%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +++ + L + YD KG+ I E KL +VK + HDG T
Sbjct: 83 MDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGST 140
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPS-CPARDIPAPS 611
+ IK DS+ + I +I+D +PG +R +T G+ + I S
Sbjct: 141 MVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPG----NRVFITGGSHVGEIATIKSIEIKS 196
Query: 612 TLCTSRTPTGHTFATRLNNVFIIGKGTKAYISLP 713
+ + F+T + VF++G K S+P
Sbjct: 197 SSGENMVHMNEGFSTVSSYVFVMG-SPKYTFSMP 229
>UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein
P0419B01.9; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0419B01.9 - Oryza sativa subsp. japonica (Rice)
Length = 123
Score = 38.3 bits (85), Expect = 0.20
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -1
Query: 726 SPC-RAAARCTPSC---PCRL*TRCSTSWRRCVPLESLMCTMSKEPGCLSRDTMVPTRPK 559
+PC RAAA C P C PCR R CV +L C P C SR P R +
Sbjct: 40 APCVRAAAPCVPPCTSRPCRRPRRHLRPPSACVRAAAL-CVPPSSPPCASRPCRRP-RHR 97
Query: 558 LRPP 547
LRPP
Sbjct: 98 LRPP 101
>UniRef50_UPI0000E49AD9 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 808
Score = 34.3 bits (75), Expect = 3.2
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 560 LGRVGTIVSRERHPGSF-----DIVHIKDSNGTHLRHEVEQRVHNRQGHEGVHLAAARQG 724
+G + V R HP S DI HI +N H R++ HN V+ R
Sbjct: 1 MGDMSQAVGRMYHPTSSLRRAGDIPHIHPANAQH-RYQ-----HNYNNAVQVYTVTTRNS 54
Query: 725 DPPHHRP 745
PPHHRP
Sbjct: 55 SPPHHRP 61
>UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 188
Score = 34.3 bits (75), Expect = 3.2
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 495 TKIMDSSSLSPGTCV*SREAVTWGAW-APSCPARDIPAPSTLCTSRTPT 638
TK+ DS+S +PG S W AW A CP R +P+P+T T+ TP+
Sbjct: 131 TKLEDSAS-TPG----STAWTAWTAWTATPCP-RSLPSPATCATTTTPS 173
>UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein;
n=1; Azoarcus sp. BH72|Rep: Conserved hypothetical
membrane protein - Azoarcus sp. (strain BH72)
Length = 232
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 100 PHKLRECLPLV---IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGLWXLSQ 270
PH+ ECL + + L R KY L ++ ++ +++ L + +VR DP P LW L +
Sbjct: 129 PHENIECLEVFHACLLLGFRGKYLLDDSDRIRYLQRTLAQELQRVRGDPQTPPALWKLPE 188
>UniRef50_A6UL31 Cluster: Extracellular solute-binding protein
family 5 precursor; n=2; Sinorhizobium|Rep:
Extracellular solute-binding protein family 5 precursor
- Sinorhizobium medicae WSM419
Length = 526
Score = 32.7 bits (71), Expect = 9.9
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +3
Query: 306 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT-HDGRTIRYPDPLIKVNDSIQL 482
D+ G F I +TPEEAK V P NV ++ + R D ++ SI +
Sbjct: 241 DLVGGFWIAPLTPEEAKQLEAAAVNVVVDPGNVTLVMAFNPDRAAALKDSQVRKAISIGI 300
Query: 483 D-IATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPTG 641
D A ++++ P + S A+ + P RD A S L TG
Sbjct: 301 DRAAISQVLYHGYAKPAGNLFS-SALPYAGKQHGAPVRDAAAASALLEKAGWTG 353
>UniRef50_Q0E050 Cluster: Os02g0578000 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os02g0578000 protein -
Oryza sativa subsp. japonica (Rice)
Length = 290
Score = 32.7 bits (71), Expect = 9.9
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 551 GRNLGRVGTIVSRE-----RHPGSFDIVHIKDSNGTHLRHEVEQRVHNRQGHEGVHLAAA 715
G + RVG ++ E RHPG+ + +H + T +R E R H G+ LA A
Sbjct: 40 GARVARVGLLLGEEGPAQHRHPGA-EALHRRVP--TAVRQE---RAHRPVPQHGLLLAPA 93
Query: 716 RQGDPPHHR 742
RQ PP HR
Sbjct: 94 RQEAPPRHR 102
>UniRef50_Q0D9D2 Cluster: Os06g0726200 protein; n=2; cellular
organisms|Rep: Os06g0726200 protein - Oryza sativa
subsp. japonica (Rice)
Length = 214
Score = 32.7 bits (71), Expect = 9.9
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 723 PCRAAARCTPSCPCRL*TRC--STSWRRCVPLESLMCTMSKEPGCLSRDTMVPTRP 562
P AAA PSC R TRC + + RR P S T S P SR + P P
Sbjct: 71 PAVAAAASPPSCRARSSTRCFSTATTRRARPRTSTPTTPSSPPPTPSRASPQPATP 126
>UniRef50_Q9HNB2 Cluster: DNA repair protein; n=6;
Halobacteriaceae|Rep: DNA repair protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 592
Score = 32.7 bits (71), Expect = 9.9
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 551 GRNLGRVGTIVSRERHP-GSFDIVHIKDSNGTHLRHEVEQRVHNRQGHEGVH--LAAARQ 721
GR+LG +GT+V E H D H D + L++ EQR R G++G +A
Sbjct: 241 GRDLGDIGTVVIDEVHTLKEDDRGHRLDGLISRLKYYCEQRREERAGYDGAQWVYLSATV 300
Query: 722 GDP 730
G+P
Sbjct: 301 GNP 303
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 52 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 213
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,476,056
Number of Sequences: 1657284
Number of extensions: 18939809
Number of successful extensions: 58736
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 55400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58671
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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