Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0481
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 171 7e-44
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 171 1e-43
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 169 3e-43
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 30 0.40
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 2.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.0
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 6.6
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 6.6
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.7
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 25 8.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.7
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 171 bits (417), Expect = 7e-44
Identities = 85/162 (52%), Positives = 106/162 (65%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIKVND+I+L++ T KI V G
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFE 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 207 IIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSI 248
Score = 139 bits (336), Expect = 4e-34
Identities = 61/83 (73%), Positives = 69/83 (83%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 184 KIVKQRLIKVDGKVRTDPTYPAG 252
I+ QRLI+VDGKVRTD T+P G
Sbjct: 63 AILMQRLIQVDGKVRTDSTFPTG 85
Score = 65.7 bits (153), Expect = 7e-12
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 634
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 171 bits (415), Expect = 1e-43
Identities = 85/162 (52%), Positives = 106/162 (65%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIKVND+I+L++ T KI V G
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFE 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 207 IIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Score = 140 bits (340), Expect = 1e-34
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 184 KIVKQRLIKVDGKVRTDPTYPAG 252
I+ QRLIKVDGKVRTD T+P G
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTG 85
Score = 65.7 bits (153), Expect = 7e-12
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 634
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 169 bits (412), Expect = 3e-43
Identities = 84/162 (51%), Positives = 106/162 (65%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD +S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIKVND+I+L++ T KI V G
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFE 206
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 207 IIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Score = 140 bits (340), Expect = 1e-34
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 184 KIVKQRLIKVDGKVRTDPTYPAG 252
I+ QRLIKVDGKVRTD T+P G
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTG 85
Score = 65.7 bits (153), Expect = 7e-12
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 634
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 0.40
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 458 QSQRFHPVRHCNYEDYGFIKFES 526
++++ HPVRH YED + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 515 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSNG 640
KFE LC + G L R+G + E GS D+V + G
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVVETIEIGG 357
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +1
Query: 121 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGLWX--LSQLRRLMNCF 294
LPLV ++ + + N L IV Q L+ V Y LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 295 V*SMMLRADSQSTVSPLRRLSTSCVK 372
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 628 LDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDESI 503
LD+H V S+ + A + AS DH VPG K + ++
Sbjct: 174 LDLHQVAQVAQSVIDN----AATIAASLDHCAVPGRKFETNL 211
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 613 VEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDESII 500
V A LAGH A VTAS+D +++ LK D + +
Sbjct: 207 VHSATKYLAGHSDVLAG-VTASKDRSKILDLKADRAYL 243
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 657 SWRRCVPLESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 511
S R P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 413 SVRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 703 MYAFVPLPIMNTLFNLVAKVCPVGVLDVHNVEGAGMSLAGHDGAHAPQVTA 551
M V L MNT + K+CP G +H E G S G+ G A Q A
Sbjct: 1 MINIVVLGSMNTDLVMRTKICPSGGETIHG-EPDGFS-TGNGGKGANQAVA 49
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 353 SLLRGDTVDCESALNIID*TKQ 288
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 267 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 440
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,532
Number of Sequences: 5004
Number of extensions: 72314
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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