Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0481
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 4e-44
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 29 4.0
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.3
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027) 28 7.0
SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 9.2
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 9.2
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 175 bits (425), Expect = 4e-44
Identities = 85/162 (52%), Positives = 105/162 (64%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD V+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDP IKVND++ +DI T K++D G G
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFD 630
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+I
Sbjct: 631 IVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSI 672
Score = 164 bits (399), Expect = 6e-41
Identities = 74/84 (88%), Positives = 78/84 (92%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KIVKQRLIK+DGKVRTD TYPAG
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAG 509
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 626 KDSNGTHLRHEVEQRVHNRQGHEGVHLAAARQGDPPHHR 742
+D N H +HE +R H R G+ H + +P + R
Sbjct: 947 EDKNKPHRKHEERERHHGRHGNSKKHRKHDEEDEPENER 985
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 240 LSCWIMDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 419
L W+ S K N ++ I D+ R I +TP+ K C+V R++TGP +++
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317
Query: 420 HDG 428
+G
Sbjct: 318 SEG 320
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 141 EES--SEVCFDRKRSPENCE 194
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
Length = 345
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 708 ARCTPSCPCRL*TRCSTSWRRCVPLESL 625
A CTP+ P R SWR+ VPL L
Sbjct: 135 ATCTPATPWRQLVPLPPSWRQLVPLPHL 162
>SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 575 TIVSRERHPGSFDIVHIKDSNGTHLRHEVEQRVHNRQGH 691
T+V +++ P +D V + DSN ++ + +VH H
Sbjct: 405 TLVQQQQEPKEYDFVFMCDSNRRYINRDELCQVHGTNKH 443
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 140 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 3
RK +R N++G ++GLG+ PP + I F K K F PR
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 218 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 102
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +3
Query: 393 PKNVPYLVTHDGRTIRYPDPLIKVNDSI--QLDIATTKIMDSSSLSPGTCV*SREAVTWG 566
P+ V + +T DG T + LIK ++I ++I + ++ S++ + + + + +
Sbjct: 150 PREVVFNITGDGMTKHWDITLIKDGETIGDYVNIGSVELSSSAATPSSSSITTTKLSSLS 209
Query: 567 AWAPSCPARDIPAPSTLCTSR-TPTGHTFATRL 662
+ S P+ P+ ST S+ + T F T++
Sbjct: 210 TPSLSTPSLSTPSLSTPLPSKPSTTWKVFRTKV 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,568,862
Number of Sequences: 59808
Number of extensions: 620216
Number of successful extensions: 1668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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