Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0481
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 167 7e-42
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 31 0.87
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 0.87
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.5
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.1
U40955-3|AAA81749.1| 194|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 167 bits (406), Expect = 7e-42
Identities = 83/162 (51%), Positives = 103/162 (63%)
Frame = +3
Query: 255 MDXVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD V+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRT
Sbjct: 86 MDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRT 145
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDP +KVND+I +I+T KI DS PG G +P S
Sbjct: 146 IRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASD 205
Query: 615 LCTSRTPTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 740
+ + GH+FATR++NVF+IGKG KA +SLP G GIRL+I
Sbjct: 206 IIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSI 247
Score = 127 bits (307), Expect = 7e-30
Identities = 60/97 (61%), Positives = 70/97 (72%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGLWXLSQLRRLMNCF 294
KI+ QR+++VDGKVRT +P G + + R F
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/86 (17%), Positives = 35/86 (40%)
Frame = +2
Query: 482 RHCNYEDYGFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSNGTHLRHEV 661
+H N ++Y + + + G+V + ++ +D VH++ + H +
Sbjct: 898 QHSNAQEYSTVHGSQTHRGSVVYDEPHGQVVYDIPHDQEHHHYDTVHVQHHHHHHYHTDG 957
Query: 662 EQRVHNRQGHEGVHLAAARQGDPPHH 739
+ VH+ E H + + + HH
Sbjct: 958 SEHVHHYHQDENAHQHSTAENEHIHH 983
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +2
Query: 551 GRNLGRVGTIVSRERHPGSFDIVHIKDSNGTHLRHEVEQRVHNRQGHEGVHLAAARQG-- 724
GR+ R G+ R H G H +G H R H G G R G
Sbjct: 338 GRHGSRSGSPGGRHGHGGRHGPPHCPGRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHH 397
Query: 725 DPPHH 739
PPHH
Sbjct: 398 GPPHH 402
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 315 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 446
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 532 LVYDHGRP*LGARGHHRVPRETSRLLRH 615
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 532 LVYDHGRP*LGARGHHRVPRETSRLLRH 615
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 472 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 308
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>U40955-3|AAA81749.1| 194|Caenorhabditis elegans Hypothetical
protein F48B9.3 protein.
Length = 194
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 512 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSNGTHLR 652
+ F SGNL T NL R+ T S ++ + + +KD +H R
Sbjct: 24 LNFLSGNL---TEAENLERLATCGSSQQKANEYGGIFLKDETSSHFR 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,689
Number of Sequences: 27780
Number of extensions: 435070
Number of successful extensions: 1242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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