Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0479
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 407 PSCFVC*ILTEWKIYI 454
           P CFVC  L  W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 407 PSCFVC*ILTEWKIYI 454
           P CFVC  L  W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 485 MGL*QRKMLKTYTGHKNEKYCIFAN 559
           +G+   +++    GH+  +YC+F N
Sbjct: 512 IGIHSGEVVTGVIGHRMPRYCLFGN 536


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 407 PSCFVC*ILTEWKIY 451
           P CFVC  L  W IY
Sbjct: 351 PVCFVCFNLMYWIIY 365


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 485 MGL*QRKMLKTYTGHKNEKYCIFAN 559
           +G+   +++    GH+  +YC+F N
Sbjct: 512 IGIHSGEVVTGVIGHRMPRYCLFGN 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,234
Number of Sequences: 438
Number of extensions: 6007
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)