BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0478 (779 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.75 SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.3 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 2.3 SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.0 SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 3.0 SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 27 4.0 SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 4.0 SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 5.3 SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 7.0 SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 9.2 SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 9.2 >SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 29.1 bits (62), Expect = 0.75 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Frame = +2 Query: 599 EKVKSY-LSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIDPKMKIHIES 763 + V+S+ LSE +S +L +AIL QL++F N I++ + ++ ++ I E+ Sbjct: 172 KSVQSFPLSEAFISK-DLGSAILLQLYDFWSRNSHIDIPSAFQEKLLSRLSIIFEN 226 >SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Schizosaccharomyces pombe|chr 1|||Manual Length = 938 Score = 28.3 bits (60), Expect = 1.3 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +1 Query: 103 RPLVNALYKSKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIR 249 RPL + S + S+++++ ISS P+ + Q ST + D + R Sbjct: 840 RPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPIRKDINGQQR 888 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.5 bits (58), Expect = 2.3 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +2 Query: 560 KQLLCAYINEKNIEKV-KSYLSELRLSNFELNTAILAQLFEFLCENDEIELAK--EIRTE 730 K L Y+ E + ++ Y+ NF L T L + + L EN+ + ++K E+ E Sbjct: 74 KTLSREYLEELSERQLCLEYIFSRMCPNFNLETKNLISISKKLSENENLPVSKIAEVTNE 133 Query: 731 IDPKMKIHIESS 766 +D ++I+ + S Sbjct: 134 LDTLVRINDQLS 145 >SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 931 Score = 27.1 bits (57), Expect = 3.0 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = +2 Query: 548 NRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN---DEIELAKE 718 N+ LL AYI ++ EK++ YL ++R + +I L + D +E + Sbjct: 498 NQAYAALLDAYIEAEDTEKIELYLGKIRRLGITEDVSINRMLMRLALDRLDWDLLEQCTK 557 Query: 719 IRTEIDPK 742 + DP+ Sbjct: 558 VAERKDPE 565 >SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces pombe|chr 2|||Manual Length = 1142 Score = 27.1 bits (57), Expect = 3.0 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +2 Query: 584 NEKN-IEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEI 703 +EKN ++ V S LSE ++ ++++ Q+F LC++ E+ Sbjct: 1088 SEKNFLQSVYSSLSESQVEDYQMELFREKQIFSVLCKDREL 1128 >SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schizosaccharomyces pombe|chr 1|||Manual Length = 378 Score = 26.6 bits (56), Expect = 4.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 25 LELGKINEASEIALQYRPRGQYNLVGRPLVNALYKSKDIN 144 +E+ ++NE E QY P Y + G +Y KD+N Sbjct: 15 IEIVQVNEKHEKDCQYHPSNTYAIFGD--AEVIYGYKDLN 52 >SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 144 Score = 26.6 bits (56), Expect = 4.0 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 650 NTAILAQLFEFLCENDEIELAKEIRTEIDPKMKI 751 N +I +L E+ CE AKEI ++ PK+ + Sbjct: 84 NRSIGTKLLEYACETAAEGKAKEIYIKLSPKLDV 117 >SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubiquinone oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 26.2 bits (55), Expect = 5.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 100 PLNCTALEDGIATLFLMPHLFFPIP 26 P NCTA+ FL+P L FPIP Sbjct: 158 PENCTAVTHD-KMKFLIPKLHFPIP 181 >SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.8 bits (54), Expect = 7.0 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +1 Query: 124 YKSKDINSFINILHVISSKPPLQSEQDSTTDEAQND 231 YK DI+S++NIL + S + S + QN+ Sbjct: 1151 YKDSDIHSWVNILLFLVGIKNTSSSERSNEQDIQNN 1186 >SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 25.4 bits (53), Expect = 9.2 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Frame = +2 Query: 533 KGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLS----NFELNTAILA-----QLFEFL 685 KG+ Q LL I + K +++ +LR NFE+ L+ + +E++ Sbjct: 58 KGSKSESAQVTLLLKDIQKVERSKSRTFCFKLRFKSSTKNFEIQACELSVADNMECYEWM 117 Query: 686 CENDEIELAKEIRTEIDPKMKIHIESSN 769 LA ++ + ++PK ++H+ N Sbjct: 118 DLISSRALASKVSSPMNPKHQVHVGIDN 145 >SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces pombe|chr 3|||Manual Length = 505 Score = 25.4 bits (53), Expect = 9.2 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -2 Query: 463 GLSIGTGSN*DELSSDSNCDTFVVIFSPRYCCIASAVSMSILSPLA 326 GL +G GS+ E S +F V+ YC + + MS+ P+A Sbjct: 35 GLFLGIGSSLAESGPASLLISFSVLGVSVYCTMLALGEMSVYMPVA 80 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,867,567 Number of Sequences: 5004 Number of extensions: 54074 Number of successful extensions: 164 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 377352472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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