Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0478
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.75
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 2.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.0
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 3.0
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 27 4.0
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 4.0
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 5.3
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 7.0
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 9.2
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 9.2
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 29.1 bits (62), Expect = 0.75
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 599 EKVKSY-LSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIDPKMKIHIES 763
+ V+S+ LSE +S +L +AIL QL++F N I++ + ++ ++ I E+
Sbjct: 172 KSVQSFPLSEAFISK-DLGSAILLQLYDFWSRNSHIDIPSAFQEKLLSRLSIIFEN 226
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 103 RPLVNALYKSKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIR 249
RPL + S + S+++++ ISS P+ + Q ST + D + R
Sbjct: 840 RPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPIRKDINGQQR 888
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 560 KQLLCAYINEKNIEKV-KSYLSELRLSNFELNTAILAQLFEFLCENDEIELAK--EIRTE 730
K L Y+ E + ++ Y+ NF L T L + + L EN+ + ++K E+ E
Sbjct: 74 KTLSREYLEELSERQLCLEYIFSRMCPNFNLETKNLISISKKLSENENLPVSKIAEVTNE 133
Query: 731 IDPKMKIHIESS 766
+D ++I+ + S
Sbjct: 134 LDTLVRINDQLS 145
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 548 NRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN---DEIELAKE 718
N+ LL AYI ++ EK++ YL ++R + +I L + D +E +
Sbjct: 498 NQAYAALLDAYIEAEDTEKIELYLGKIRRLGITEDVSINRMLMRLALDRLDWDLLEQCTK 557
Query: 719 IRTEIDPK 742
+ DP+
Sbjct: 558 VAERKDPE 565
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 584 NEKN-IEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEI 703
+EKN ++ V S LSE ++ ++++ Q+F LC++ E+
Sbjct: 1088 SEKNFLQSVYSSLSESQVEDYQMELFREKQIFSVLCKDREL 1128
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 25 LELGKINEASEIALQYRPRGQYNLVGRPLVNALYKSKDIN 144
+E+ ++NE E QY P Y + G +Y KD+N
Sbjct: 15 IEIVQVNEKHEKDCQYHPSNTYAIFGD--AEVIYGYKDLN 52
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 650 NTAILAQLFEFLCENDEIELAKEIRTEIDPKMKI 751
N +I +L E+ CE AKEI ++ PK+ +
Sbjct: 84 NRSIGTKLLEYACETAAEGKAKEIYIKLSPKLDV 117
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 100 PLNCTALEDGIATLFLMPHLFFPIP 26
P NCTA+ FL+P L FPIP
Sbjct: 158 PENCTAVTHD-KMKFLIPKLHFPIP 181
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 124 YKSKDINSFINILHVISSKPPLQSEQDSTTDEAQND 231
YK DI+S++NIL + S + S + QN+
Sbjct: 1151 YKDSDIHSWVNILLFLVGIKNTSSSERSNEQDIQNN 1186
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Frame = +2
Query: 533 KGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLS----NFELNTAILA-----QLFEFL 685
KG+ Q LL I + K +++ +LR NFE+ L+ + +E++
Sbjct: 58 KGSKSESAQVTLLLKDIQKVERSKSRTFCFKLRFKSSTKNFEIQACELSVADNMECYEWM 117
Query: 686 CENDEIELAKEIRTEIDPKMKIHIESSN 769
LA ++ + ++PK ++H+ N
Sbjct: 118 DLISSRALASKVSSPMNPKHQVHVGIDN 145
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 463 GLSIGTGSN*DELSSDSNCDTFVVIFSPRYCCIASAVSMSILSPLA 326
GL +G GS+ E S +F V+ YC + + MS+ P+A
Sbjct: 35 GLFLGIGSSLAESGPASLLISFSVLGVSVYCTMLALGEMSVYMPVA 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,567
Number of Sequences: 5004
Number of extensions: 54074
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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