SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0478
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.75 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.3  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.0  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    27   4.0  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   4.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   5.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   7.0  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   9.2  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   9.2  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 599 EKVKSY-LSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIDPKMKIHIES 763
           + V+S+ LSE  +S  +L +AIL QL++F   N  I++    + ++  ++ I  E+
Sbjct: 172 KSVQSFPLSEAFISK-DLGSAILLQLYDFWSRNSHIDIPSAFQEKLLSRLSIIFEN 226


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 103 RPLVNALYKSKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIR 249
           RPL   +  S  + S+++++  ISS  P+ + Q ST    + D   + R
Sbjct: 840 RPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPIRKDINGQQR 888


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 560 KQLLCAYINEKNIEKV-KSYLSELRLSNFELNTAILAQLFEFLCENDEIELAK--EIRTE 730
           K L   Y+ E +  ++   Y+      NF L T  L  + + L EN+ + ++K  E+  E
Sbjct: 74  KTLSREYLEELSERQLCLEYIFSRMCPNFNLETKNLISISKKLSENENLPVSKIAEVTNE 133

Query: 731 IDPKMKIHIESS 766
           +D  ++I+ + S
Sbjct: 134 LDTLVRINDQLS 145


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 548 NRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN---DEIELAKE 718
           N+    LL AYI  ++ EK++ YL ++R      + +I   L     +    D +E   +
Sbjct: 498 NQAYAALLDAYIEAEDTEKIELYLGKIRRLGITEDVSINRMLMRLALDRLDWDLLEQCTK 557

Query: 719 IRTEIDPK 742
           +    DP+
Sbjct: 558 VAERKDPE 565


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 584  NEKN-IEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEI 703
            +EKN ++ V S LSE ++ ++++      Q+F  LC++ E+
Sbjct: 1088 SEKNFLQSVYSSLSESQVEDYQMELFREKQIFSVLCKDREL 1128


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 25  LELGKINEASEIALQYRPRGQYNLVGRPLVNALYKSKDIN 144
           +E+ ++NE  E   QY P   Y + G      +Y  KD+N
Sbjct: 15  IEIVQVNEKHEKDCQYHPSNTYAIFGD--AEVIYGYKDLN 52


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 650 NTAILAQLFEFLCENDEIELAKEIRTEIDPKMKI 751
           N +I  +L E+ CE      AKEI  ++ PK+ +
Sbjct: 84  NRSIGTKLLEYACETAAEGKAKEIYIKLSPKLDV 117


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 100 PLNCTALEDGIATLFLMPHLFFPIP 26
           P NCTA+       FL+P L FPIP
Sbjct: 158 PENCTAVTHD-KMKFLIPKLHFPIP 181


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 124  YKSKDINSFINILHVISSKPPLQSEQDSTTDEAQND 231
            YK  DI+S++NIL  +       S + S   + QN+
Sbjct: 1151 YKDSDIHSWVNILLFLVGIKNTSSSERSNEQDIQNN 1186


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
 Frame = +2

Query: 533 KGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLS----NFELNTAILA-----QLFEFL 685
           KG+     Q  LL   I +    K +++  +LR      NFE+    L+     + +E++
Sbjct: 58  KGSKSESAQVTLLLKDIQKVERSKSRTFCFKLRFKSSTKNFEIQACELSVADNMECYEWM 117

Query: 686 CENDEIELAKEIRTEIDPKMKIHIESSN 769
                  LA ++ + ++PK ++H+   N
Sbjct: 118 DLISSRALASKVSSPMNPKHQVHVGIDN 145


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 463 GLSIGTGSN*DELSSDSNCDTFVVIFSPRYCCIASAVSMSILSPLA 326
           GL +G GS+  E    S   +F V+    YC + +   MS+  P+A
Sbjct: 35  GLFLGIGSSLAESGPASLLISFSVLGVSVYCTMLALGEMSVYMPVA 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,567
Number of Sequences: 5004
Number of extensions: 54074
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -