Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0478
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0493 + 21402536-21404599 40 0.002
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21... 31 0.78
10_08_0510 + 18430580-18431781,18433176-18433554 31 1.4
05_01_0242 + 1804183-1806096 31 1.4
01_07_0336 - 42833205-42834926 30 1.8
02_04_0376 - 22474473-22476947 30 2.4
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 29 4.1
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710... 29 5.5
12_02_0033 + 12530311-12531264 28 7.2
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 28 7.2
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 7.2
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 28 9.6
04_03_0203 + 12640502-12641074 28 9.6
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 28 9.6
>06_03_0493 + 21402536-21404599
Length = 687
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 497 ARNRSIIARLKEKGTNVNRL-QKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
A ++ +++ G N L L+ + KN EK LSE++ EL+ ++ L
Sbjct: 380 AEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGAL 439
Query: 674 FEFLCENDEIELAKEIRTEID 736
+ LC +++ AK + T++D
Sbjct: 440 IQGLCNVHKLDEAKSLLTKMD 460
>06_01_0021 -
214401-214613,214707-214790,214887-215041,215165-215234,
215334-215509,215631-215803,216715-216938
Length = 364
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 188 RGGLLLITCKMLMKELISLLL*SALTKGRPTKLYCPRGRYCNAISDASFIFPNSR 24
+GGL + L L S + L +G+ + L CP G Y +S F P +R
Sbjct: 17 KGGLEYVYLSGLGNSLSSEAVAGTLPRGQNSPLVCPLGLYAEQLSGTPFTAPRAR 71
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIE 706
L+CAY ++ +E+ S++R N + + LC++ +E
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308
>05_01_0242 + 1804183-1806096
Length = 637
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 551 RLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTE 730
R+ LL A + E + V +R + + N L LC+ND ++ A+++ E
Sbjct: 123 RVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDE 182
Query: 731 IDPK 742
+ K
Sbjct: 183 MSRK 186
>01_07_0336 - 42833205-42834926
Length = 573
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 596 IEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIDPKMKI 751
+EK Y +E+ N E + A+L + + LC +D+I+ + E+ K +
Sbjct: 400 VEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANL 451
>02_04_0376 - 22474473-22476947
Length = 824
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEID-PK 742
L+ Y ++ + ++ L F + A L E LCE I+ A E+ E+D P
Sbjct: 173 LIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPD 232
Query: 743 MKIH 754
M ++
Sbjct: 233 MHMY 236
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 563 QLLCAYINEKNIEKVKSYLSEL-RLSNFELNTAILAQLFEFLCENDEI-ELAKEI 721
Q C +NEK I + SYL +L + S+ E+ ++ A F+ + EI +L +E+
Sbjct: 52 QSKCHAMNEKEIRHLCSYLQDLKKASSEEMRRSVYANYAAFIRTSKEISDLEREL 106
>03_02_0286 +
7100342-7100504,7100613-7100719,7102109-7102240,
7102383-7102539,7103099-7103220
Length = 226
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 13 MIHLLELGKINEASEIAL-QYRPRGQYNLV 99
+I L+ GKINEA E A + PRG+ N V
Sbjct: 107 LIELIRAGKINEALEFAQEELAPRGEENQV 136
>12_02_0033 + 12530311-12531264
Length = 317
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = -3
Query: 477 VQSFVDSRLEQALIETN*VLIVIATPSL--SYFH 382
V+S +D R+E+ LI T ++++IAT + +YFH
Sbjct: 271 VESELDGRIERTLIITCLIILIIATAIVITTYFH 304
>10_08_0495 - 18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/47 (19%), Positives = 23/47 (48%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIE 706
L+CAY ++ +++ S++R N + + LC++ ++
Sbjct: 1259 LICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVD 1305
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 217 EAQNDSKNEIRDM-VALSNLQLKVYLRMKVKVF*KLLMPKGLVLTLRQLKLYSNISVKI 390
E N SKN I + + LSNL YL ++ + ++ +P GL+ L +L++ + I
Sbjct: 623 EYLNLSKNRILSLPMELSNLSQLKYLYLRDNYYIQITIPAGLISRLGKLQVLELFTASI 681
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 145 SFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIR 249
SF ++HV+ P+Q DS D+ ND + +R
Sbjct: 354 SFDLLIHVLEVVDPVQQLLDSPPDDPYNDDREALR 388
>04_03_0203 + 12640502-12641074
Length = 190
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 385 SPRYCCIASAVSMSILSPLA 326
SP YCC+A+ +S++ SP A
Sbjct: 2 SPFYCCLAAVLSLASASPAA 21
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 593 NIEKVKSYLSELRLSNFELNTAI--LAQLFEFLCENDEIELAKEIRT 727
N++ +SY S +SN ++NT+ + + C N++++ KEIR+
Sbjct: 468 NLQSTESYNSGRDISNTDVNTSFGCTSDVNTSTCCNEDVKSPKEIRS 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,175
Number of Sequences: 37544
Number of extensions: 304431
Number of successful extensions: 716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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