Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0478
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)                    31   1.0  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)                   29   5.6  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)            28   7.4  
SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
          Length = 935

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 560 KQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIEL 709
           K +L  Y  E + EK+K Y+  L+  NF   T +  + FE L E    +L
Sbjct: 315 KAILHDYGAELSEEKMKEYMKALKTKNFSNRTMMSDECFESLLEGGAADL 364


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 136 DINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEI 246
           DINS +++LH  S   P+Q E     D+  +  K E+
Sbjct: 849 DINSGVDMLHKSSEVEPIQEEMYDDVDQVADQVKAEL 885


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 563  QLLCAYINEKNIEKVKSYLSELRLSNFELNTAILA-QLFEFLCENDEIELAK--EIRTEI 733
            Q L  +INEK  + +K++L ELR      +  + A ++F  +C  D +   +  +I ++ 
Sbjct: 812  QCLQIHINEKRHKTIKTFLRELRREIKNPDKILAAMRMFTNICNEDRVHNLRYFKIASKH 871

Query: 734  DPKM 745
            +P+M
Sbjct: 872  NPEM 875


>SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)
          Length = 717

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 300 SEGILEAAYAKGLSIDIETAEAIQQYLGENMTTK 401
           ++ +L A Y+KGL    +TA  I++ +G+N T K
Sbjct: 240 AQRLLRAQYSKGLHPAKQTARKIEREVGQNETQK 273


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 110  KGRPTKLYCPRGRYCNAISDASFIFP 33
            +G   + YCP GR+CN  +   +I P
Sbjct: 3009 EGAKYETYCPAGRFCNYTTAEPYICP 3034


>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
          Length = 558

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +2

Query: 488 SFSARNRSIIAR-LKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAIL 664
           S +A+ + ++ + LKEK   +N+L + L      EK   K K Y   ++L + ++  A  
Sbjct: 373 SAAAKEKRLLKQQLKEKEFEINKLNENL------EKAERKQKEYEDLIQLKDVDVRKAAE 426

Query: 665 AQLFEFLCENDEIELAKEIRTEIDPKMK 748
            +   F    +  E+A   +TE + K++
Sbjct: 427 EKEGMFKAMREAFEVASTKKTEYENKLE 454


>SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 169 ISSKPPLQSEQ---DSTTDEAQNDSKNEIRDMVALSNLQLKVYLRMKVKVF 312
           +S  PP  SE+   D+TT + + + +  ++    L  L+L++YL  ++  F
Sbjct: 25  VSDTPPANSEKSTKDNTTSKPETNPEIIVKQRKQLEVLRLRIYLLARLLAF 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,290,371
Number of Sequences: 59808
Number of extensions: 361233
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)