Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0478
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens ... 32 2.0
M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif co... 31 3.5
BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif ... 31 3.5
BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif ... 31 3.5
AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR motif-... 31 3.5
AC108476-3|AAY24012.1| 844|Homo sapiens unknown protein. 31 3.5
AY598745-1|AAT47519.1| 1068|Homo sapiens AF10 protein. 31 6.1
AL359697-2|CAH73411.1| 1068|Homo sapiens myeloid/lymphoid or mix... 31 6.1
AL358780-4|CAI13980.1| 1068|Homo sapiens myeloid/lymphoid or mix... 31 6.1
AL357372-2|CAI41349.1| 1068|Homo sapiens myeloid/lymphoid or mix... 31 6.1
AL161799-2|CAI39664.1| 1068|Homo sapiens myeloid/lymphoid or mix... 31 6.1
>AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens
cDNA FLJ43793 fis, clone TESTI4000014, highly similar
to 130 kDa leucine-rich protein. ).
Length = 1394
Score = 32.3 bits (70), Expect = 2.0
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLS-NFELNTAILAQ 670
S+ S + LK + + + KQL+ +E+N++K ELR ++ T A
Sbjct: 661 SSELESTLETLKAENRPIRDVLKQLILVLCSEENMQKA----LELRAKYESDMVTGGYAA 716
Query: 671 LFEFLCENDEIELAKEIRTEID 736
L C +D++E A ++ E D
Sbjct: 717 LINLCCRHDKVEDALNLKEEFD 738
>M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif
containing protein protein.
Length = 1273
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
S+ S + LK + + + KQL+ +E+N++K ++ ++ T A L
Sbjct: 540 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKY---ESDMVTGGYAAL 596
Query: 674 FEFLCENDEIELAKEIRTEID 736
C +D++E A ++ E D
Sbjct: 597 INLCCRHDKVEDALNLKEEFD 617
>BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
S+ S + LK + + + KQL+ +E+N++K ++ ++ T A L
Sbjct: 661 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKY---ESDMVTGGYAAL 717
Query: 674 FEFLCENDEIELAKEIRTEID 736
C +D++E A ++ E D
Sbjct: 718 INLCCRHDKVEDALNLKEEFD 738
>BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
S+ S + LK + + + KQL+ +E+N++K ++ ++ T A L
Sbjct: 661 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKY---ESDMVTGGYAAL 717
Query: 674 FEFLCENDEIELAKEIRTEID 736
C +D++E A ++ E D
Sbjct: 718 INLCCRHDKVEDALNLKEEFD 738
>AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR
motif-containing protein protein.
Length = 1394
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
S+ S + LK + + + KQL+ +E+N++K ++ ++ T A L
Sbjct: 661 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKY---ESDMVTGGYAAL 717
Query: 674 FEFLCENDEIELAKEIRTEID 736
C +D++E A ++ E D
Sbjct: 718 INLCCRHDKVEDALNLKEEFD 738
>AC108476-3|AAY24012.1| 844|Homo sapiens unknown protein.
Length = 844
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +2
Query: 494 SARNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQL 673
S+ S + LK + + + KQL+ +E+N++K ++ ++ T A L
Sbjct: 111 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKY---ESDMVTGGYAAL 167
Query: 674 FEFLCENDEIELAKEIRTEID 736
C +D++E A ++ E D
Sbjct: 168 INLCCRHDKVEDALNLKEEFD 188
>AY598745-1|AAT47519.1| 1068|Homo sapiens AF10 protein.
Length = 1068
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 RNVMIHLLELGKINEASEIALQYR-----PRGQYNLVGRPLVNALYKSKDIN-SFINILH 165
RN + L +G SEI++QYR P ++ + + N +Y S D+ SF N++
Sbjct: 524 RNGSLQSLSVGSSPVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVS 583
Query: 166 VISSKPPLQS 195
S P+ S
Sbjct: 584 GSGSSTPVSS 593
>AL359697-2|CAH73411.1| 1068|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 1068
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 RNVMIHLLELGKINEASEIALQYR-----PRGQYNLVGRPLVNALYKSKDIN-SFINILH 165
RN + L +G SEI++QYR P ++ + + N +Y S D+ SF N++
Sbjct: 524 RNGSLQSLSVGSSPVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVS 583
Query: 166 VISSKPPLQS 195
S P+ S
Sbjct: 584 GSGSSTPVSS 593
>AL358780-4|CAI13980.1| 1068|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 1068
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 RNVMIHLLELGKINEASEIALQYR-----PRGQYNLVGRPLVNALYKSKDIN-SFINILH 165
RN + L +G SEI++QYR P ++ + + N +Y S D+ SF N++
Sbjct: 524 RNGSLQSLSVGSSPVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVS 583
Query: 166 VISSKPPLQS 195
S P+ S
Sbjct: 584 GSGSSTPVSS 593
>AL357372-2|CAI41349.1| 1068|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 1068
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 RNVMIHLLELGKINEASEIALQYR-----PRGQYNLVGRPLVNALYKSKDIN-SFINILH 165
RN + L +G SEI++QYR P ++ + + N +Y S D+ SF N++
Sbjct: 524 RNGSLQSLSVGSSPVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVS 583
Query: 166 VISSKPPLQS 195
S P+ S
Sbjct: 584 GSGSSTPVSS 593
>AL161799-2|CAI39664.1| 1068|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 1068
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 RNVMIHLLELGKINEASEIALQYR-----PRGQYNLVGRPLVNALYKSKDIN-SFINILH 165
RN + L +G SEI++QYR P ++ + + N +Y S D+ SF N++
Sbjct: 524 RNGSLQSLSVGSSPVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVS 583
Query: 166 VISSKPPLQS 195
S P+ S
Sbjct: 584 GSGSSTPVSS 593
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,791,382
Number of Sequences: 237096
Number of extensions: 1715357
Number of successful extensions: 3266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3263
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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