BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0478 (779 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p pro... 43 5e-04 AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA ... 43 5e-04 AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-P... 43 5e-04 AE014298-1065|AAN09215.1| 1208|Drosophila melanogaster CG2175-PB... 29 7.2 DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. 29 9.5 >AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p protein. Length = 1412 Score = 42.7 bits (96), Expect = 5e-04 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +2 Query: 515 IARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN 694 I ++ KG N N +++QLL A +N+EK + +L F++ I AQL + + Sbjct: 664 IVNVEGKGENANNIKRQLLNACFRSQNLEKTLQVIEKLEAEKFQIPVGIYAQLIDLNTHH 723 Query: 695 DEIELAKEIRTEIDPK 742 + A EI ++ K Sbjct: 724 KKSSEALEIYGKLKAK 739 Score = 29.5 bits (63), Expect = 5.4 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +3 Query: 303 EGILEAAYAKGLSIDIETAEAIQQYLGENMTTKVXXXXXXXXXXXXXPVPI 455 E IL+ +GLSI + A + + LG +T K+ PVP+ Sbjct: 594 EKILKGLVKQGLSISSDKATQLSEQLGSELTPKISELLGKLSSGELEPVPL 644 >AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA stability factor protein. Length = 1412 Score = 42.7 bits (96), Expect = 5e-04 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +2 Query: 515 IARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN 694 I ++ KG N N +++QLL A +N+EK + +L F++ I AQL + + Sbjct: 664 IVNVEGKGENANNIKRQLLNACFRSQNLEKTLQVIEKLEAEKFQIPVGIYAQLIDLNTHH 723 Query: 695 DEIELAKEIRTEIDPK 742 + A EI ++ K Sbjct: 724 KKSSEALEIYGKLKAK 739 Score = 29.5 bits (63), Expect = 5.4 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +3 Query: 303 EGILEAAYAKGLSIDIETAEAIQQYLGENMTTKVXXXXXXXXXXXXXPVPI 455 E IL+ +GLSI + A + + LG +T K+ PVP+ Sbjct: 594 EKILKGLVKQGLSISSDKATQLSEQLGSELTPKISELLGKLSSGELEPVPL 644 >AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-PA protein. Length = 1412 Score = 42.7 bits (96), Expect = 5e-04 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +2 Query: 515 IARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCEN 694 I ++ KG N N +++QLL A +N+EK + +L F++ I AQL + + Sbjct: 664 IVNVEGKGENANNIKRQLLNACFRSQNLEKTLQVIEKLEAEKFQIPVGIYAQLIDLNTHH 723 Query: 695 DEIELAKEIRTEIDPK 742 + A EI ++ K Sbjct: 724 KKSSEALEIYGKLKAK 739 Score = 29.5 bits (63), Expect = 5.4 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +3 Query: 303 EGILEAAYAKGLSIDIETAEAIQQYLGENMTTKVXXXXXXXXXXXXXPVPI 455 E IL+ +GLSI + A + + LG +T K+ PVP+ Sbjct: 594 EKILKGLVKQGLSISSDKATQLSEQLGSELTPKISELLGKLSSGELEPVPL 644 >AE014298-1065|AAN09215.1| 1208|Drosophila melanogaster CG2175-PB, isoform B protein. Length = 1208 Score = 29.1 bits (62), Expect = 7.2 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +3 Query: 255 GRIIKSAVKSLPKNESEGILEAAYAKGLSIDIETAEAIQQ 374 G+I K K+ PKNE E + E A+ + ET +++++ Sbjct: 1120 GKISKPKTKTKPKNEDEPVFELGAAERSLFEDETNDSLEK 1159 >DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. Length = 1715 Score = 28.7 bits (61), Expect = 9.5 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +1 Query: 178 KPPLQSEQDSTTDEAQNDSKNEIRD 252 KP LQSE+D + +E + D+++E D Sbjct: 575 KPNLQSEEDKSEEEKREDTESECSD 599 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 29,830,785 Number of Sequences: 53049 Number of extensions: 553620 Number of successful extensions: 1148 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1147 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3623012976 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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