Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0478
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 37 0.013
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 33 0.21
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 32 0.49
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 32 0.49
At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containi... 31 1.1
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 31 1.1
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi... 31 1.1
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi... 29 2.6
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 29 3.5
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 29 3.5
At1g02110.1 68414.m00137 proline-rich family protein contains pr... 29 3.5
At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containi... 29 4.6
At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containi... 29 4.6
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 28 8.0
At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containi... 28 8.0
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami... 28 8.0
At2g26830.1 68415.m03219 choline/ethanolamine kinase family prot... 28 8.0
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 28 8.0
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 506 RSIIARLKEKGTNVNRLQKQLLC-AYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEF 682
RSI + + EKG N +L + K+ + ++++ SNFE N I +
Sbjct: 504 RSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIING 563
Query: 683 LCENDEIELAKEI 721
LC+ + AKE+
Sbjct: 564 LCKVGQTSKAKEM 576
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 130 SKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIRDMVALSNLQLKVY 288
S+ I SFIN++HVIS+K Q+++ ++ SK + ++ NL+ K Y
Sbjct: 651 SEAIKSFINVVHVISAK---QADEHKIKKRTESASKELEKKASSVRNLERKYY 700
>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 672
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 43 NEASEIALQYRP-RG-QYNLVGRPLVNALYKSKDINSFINILHVISSKPPLQSE--QDST 210
NEA++++ Q +G Q +GR + N+ K++ + S ++I ++ PP + E +DST
Sbjct: 526 NEATDVSTQSESNKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATPPSKQETQEDST 585
Query: 211 TDEAQNDSK 237
A +K
Sbjct: 586 VSSASKRAK 594
>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 588
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 43 NEASEIALQYRP-RG-QYNLVGRPLVNALYKSKDINSFINILHVISSKPPLQSE--QDST 210
NEA++++ Q +G Q +GR + N+ K++ + S ++I ++ PP + E +DST
Sbjct: 442 NEATDVSTQSESNKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATPPSKQETQEDST 501
Query: 211 TDEAQNDSK 237
A +K
Sbjct: 502 VSSASKRAK 510
>At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 637
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 512 IIARLKEKGTNVNRLQ-KQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLC 688
++ ++ E G + + LL Y N + L ++R FE N L + LC
Sbjct: 274 VLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALC 333
Query: 689 ENDEIELAKEIRTEID 736
+ D +E A ++ E++
Sbjct: 334 KVDRMEEAMKVFVEME 349
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTE 730
L+ AY + N+E+V +E++ +T L LC+ +++ A E+ E
Sbjct: 304 LITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEE 358
>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 946
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEI 733
LL + +E+ + L + + E N + L + LC+ +++ A+E++TE+
Sbjct: 604 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEM 659
>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 903
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 641 FELNTAILAQLFEFLCENDEIELAKEI 721
FEL T + L E LC+ DE+E+A I
Sbjct: 729 FELGTFLYKDLVESLCKKDELEVASGI 755
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 593 NIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIDPK 742
N++K S E+ N I L C + EIE AKE+ E+ K
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK 691
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 258 RIIKSAVKSLPKNESEGILEAAYAKGLSIDIE 353
+I+K +++L KN+ +L+A A+ L +D+E
Sbjct: 731 KILKEEIENLKKNQDSLMLQAEQAENLRVDLE 762
>At1g02110.1 68414.m00137 proline-rich family protein contains
proline-rich domain, INTERPRO:IPR000694
Length = 679
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 130 SKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIRDMVALSNLQLKVY 288
S+ I SF+N++HVIS K + + T+ A + + + + ++ + Y
Sbjct: 540 SEAIKSFVNVVHVISIKQAEEVKMKKRTESAGKELEKKASSLRSIERKYYQAY 592
>At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 566
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 596 IEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEI 733
IEK L EL F N I L + C+ EIE AK++ E+
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
>At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat; gene
structure supported by cDNA sequence and Brassica genome
sequence alignments.
Length = 626
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +2
Query: 500 RNRSIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFE 679
R RS+++ +KE + L+ AY NE+ + + L + F + + ++ E
Sbjct: 235 RARSLMSEMKEPNDVTFNI---LISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTKVME 291
Query: 680 FLCENDEIELAKEIRTEIDPK 742
LC + A E+ ++ K
Sbjct: 292 VLCNEGRVSEALEVLERVESK 312
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 512 IIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCE 691
I+++ K N R ++ +L +++ + +LR +LN++I + EFL
Sbjct: 84 ILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSL 143
Query: 692 NDEI 703
DEI
Sbjct: 144 LDEI 147
>At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 472
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEI 721
L+ KN+++ YL E++ E N + L + LC++ A E+
Sbjct: 233 LINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284
>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
protein similar to PABA synthase from Streptomyces
griseus [SP|P32483], Streptomyces pristinaespiralis
[gi:1575336]; contains Pfam profiles PF00425:
chorismate binding enzyme, PF00117: glutamine
amidotransferase class-I, PF04715: Anthranilate synthase
component I, N terminal region
Length = 919
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 122 STKVKISIPSSTFYMLSAASRLFSP 196
ST ++S PS S ASRLFSP
Sbjct: 9 STSSELSYPSENVLRFSVASRLFSP 33
>At2g26830.1 68415.m03219 choline/ethanolamine kinase family protein
similar to SP|Q9HBU6 Ethanolamine kinase (EC 2.7.1.82)
(EKI){Homo sapiens}, GmCK3p [Glycine max] GI:1438883;
contains Pfam profile PF01633: Choline/ethanolamine
kinase
Length = 374
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 131 VKISIPSSTFYMLSAASRLFSPNKTQLLTKLKTIVKMKYV 250
+K+S+ T +S RL+ PN ++ + + I+ +KY+
Sbjct: 76 LKVSVKEDTNKEVSVTVRLYGPNTEYVINREREILAIKYL 115
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 566 LLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEI 733
L+ ++ KN+++ L+EL+ + + + LC ++IE AK + E+
Sbjct: 346 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEM 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,635
Number of Sequences: 28952
Number of extensions: 262936
Number of successful extensions: 750
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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