Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0477
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 146 4e-36
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 146 4e-36
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 146 4e-36
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 38 0.002
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.12
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 29 0.81
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 5.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 146 bits (353), Expect = 4e-36
Identities = 75/158 (47%), Positives = 96/158 (60%)
Frame = +2
Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
+TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
+TRVKLPSGAKKV+PSS RG+VG++ + K R
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
QH+G ++TV R ++ G+KVGLIAA
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 119 bits (287), Expect = 4e-28
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1
Query: 10 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
V FR+PY ++T E F+A EG +
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 103 bits (246), Expect = 4e-23
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +1
Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
VAGGGRIDKP+ KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNH
Sbjct: 168 VAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNH 215
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 146 bits (353), Expect = 4e-36
Identities = 75/158 (47%), Positives = 96/158 (60%)
Frame = +2
Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
+TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
+TRVKLPSGAKKV+PSS RG+VG++ + K R
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
QH+G ++TV R ++ G+KVGLIAA
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 119 bits (287), Expect = 4e-28
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1
Query: 10 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
V FR+PY ++T E F+A EG +
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 103 bits (246), Expect = 4e-23
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +1
Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
VAGGGRIDKP+ KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNH
Sbjct: 168 VAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNH 215
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 146 bits (353), Expect = 4e-36
Identities = 75/158 (47%), Positives = 96/158 (60%)
Frame = +2
Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
+TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
+TRVKLPSGAKKV+PSS RG+VG++ + K R
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
QH+G ++TV R ++ G+KVGLIAA
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 119 bits (287), Expect = 4e-28
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1
Query: 10 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
V FR+PY ++T E F+A EG +
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 103 bits (246), Expect = 4e-23
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +1
Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
VAGGGRIDKP+ KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNH
Sbjct: 168 VAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNH 215
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 595 PYVRGVAMNPVEHPHGGG 648
P VRG AMNP +HPHGGG
Sbjct: 256 PTVRGTAMNPCDHPHGGG 273
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 540 RFVNTSTSSNKPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 400
RF+N +T+S+ PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 529 IDKPIXKAGRAYHKYKVKRNCWPYVRGVAMN 621
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 702 PADVPLLTVEALPICWMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSS 550
P D+P ++E +P C ++ T L R T + A+ F ++ + P+S
Sbjct: 121 PPDIPD-SIEGIPGCHIIYTLTASLERATQPPTNLETALQFRVIRTIPPNS 170
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 378 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 280
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,013
Number of Sequences: 5004
Number of extensions: 79115
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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