Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0477
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 141 7e-34
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 30 2.0
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.5
03_02_0191 - 6270591-6271364,6271458-6272168 29 6.0
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 6.0
04_04_1600 + 34704527-34704758,34705393-34706777 28 8.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 28 8.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 141 bits (341), Expect = 7e-34
Identities = 72/158 (45%), Positives = 93/158 (58%)
Frame = +2
Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
+TGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD
Sbjct: 83 YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPD 142
Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
+R+KLPSGAKK++PSS R M+G + K R
Sbjct: 143 NGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGV 202
Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
QHIG ASTV+R G+KVGLIAA
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
Score = 129 bits (311), Expect = 3e-30
Identities = 59/83 (71%), Positives = 69/83 (83%)
Frame = +1
Query: 10 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
V FR P+++K +KELF+A EG +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMY 83
Score = 101 bits (242), Expect = 7e-22
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +1
Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
VAGGGR +KP+ KAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNH
Sbjct: 169 VAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNH 216
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 516 WRWTY*QTYXESWKGIPQVQG 578
W WTY T+ SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 394 LWKLRHCDWT 423
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>03_02_0191 - 6270591-6271364,6271458-6272168
Length = 494
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -1
Query: 684 LTVEALPICWMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFXNRFVNTSTSSNKP 505
LT+ +P+ M T + + G +W ++ DLV ++C S F FV T ++P
Sbjct: 28 LTLLLVPV--MAATALELARMGPGELLSLWRSLQLDLVHILC-SVFLVVFVGTVYFMSRP 84
Query: 504 TMPLLLDGRTFLAP 463
L+D + P
Sbjct: 85 RPVYLVDYSCYKPP 98
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 6.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 425 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 336
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 771 SLYGLASHESFRSCGAAIRPTLRPADVPLLTVEALPICWMVTTTV 637
+L LA + RS G A+ DV +V PICW++++ +
Sbjct: 394 TLAALAHGSASRSAGIAVAILTVCGDVAFFSVGIGPICWVMSSEI 438
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.3 bits (60), Expect = 8.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 516 WRWTY*QTYXESWKGIPQVQG 578
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,699,032
Number of Sequences: 37544
Number of extensions: 583885
Number of successful extensions: 1495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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