Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0477
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   6e-40
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       138   5e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    40   0.002
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)                29   4.6  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 29   4.6  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.1  
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   28   8.1  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  161 bits (391), Expect = 6e-40
 Identities = 82/158 (51%), Positives = 100/158 (63%)
 Frame = +2

Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
           +TGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 83  YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 142

Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
            KRTRVKLPSG KKV+PSSNR +VG++     +     K        ++           
Sbjct: 143 KKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGV 202

Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
                         QHIG  STV+R T AGRKVGLIAA
Sbjct: 203 AMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKVGLIAA 240



 Score =  144 bits (348), Expect = 1e-34
 Identities = 66/83 (79%), Positives = 72/83 (86%)
 Frame = +1

Query: 10  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
           V FRDPY++K RKELF+A EG +
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMY 83



 Score =  106 bits (255), Expect = 2e-23
 Identities = 44/48 (91%), Positives = 45/48 (93%)
 Frame = +1

Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
           VAGGGRIDKP+ KAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNH
Sbjct: 169 VAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNH 216


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  138 bits (334), Expect = 5e-33
 Identities = 60/83 (72%), Positives = 72/83 (86%)
 Frame = +2

Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
           +TGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 41  YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 100

Query: 434 AKRTRVKLPSGAKKVLPSSNRGM 502
            KRTRVKLPSG KKV+PSSNR +
Sbjct: 101 KKRTRVKLPSGIKKVIPSSNRAL 123



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +1

Query: 136 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSH 258
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 26/80 (32%), Positives = 42/80 (52%)
 Frame = +2

Query: 287 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 466
           A L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS 
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167

Query: 467 AKKVLPSSNRGMVGLLLEVD 526
            +K + S     VG +  ++
Sbjct: 168 VEKEVSSKCLASVGRVSNIE 187


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 748 RILPVLRSSNKTNFATSRCSSLDSGSLTYMLDGYHHREDALQGSWQHHVHMASSYV 581
           +I+ +  SS+ ++ ++S  SS  S  L+     +HHR   L   + HH H+   ++
Sbjct: 233 KIIILSSSSSSSSSSSSSLSSSSSSPLSSYYHHHHHRRHHLN-HYHHHYHLDDHFI 287


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 442 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 269
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 268 KLACVS 251
              CVS
Sbjct: 136 NQRCVS 141


>SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 428 PDAKRTRVKLPSGAKKV---LPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAG 595
           P+A  T+V +PS A      +P S+    G +++ ++L N+   + GH      NVT G
Sbjct: 5   PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 63


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 428  PDAKRTRVKLPSGAKKV---LPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAG 595
            P+A  T+V +PS A      +P S+    G +++ ++L N+   + GH      NVT G
Sbjct: 1191 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 1249


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 383  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLE 556
            +AR +G+F   T +    D  RTR   P   KKVL ++N G   L ++V+ ++    + E
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQ--LAIQVNSISISGYECE 1526

Query: 557  GH 562
            G+
Sbjct: 1527 GY 1528


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 706 ATSRCSSLDSG--SLTYMLDGYHHREDALQGSWQHHV 602
           A  RC  LD+   S+T   D YH   D  +  W+H V
Sbjct: 244 AQQRCLELDAKLTSITEKSDTYHKERDHAKEQWRHSV 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,830,856
Number of Sequences: 59808
Number of extensions: 647419
Number of successful extensions: 1599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)