Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0477
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   4.6  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    22   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 367 HFLFKIAHNGTLRHSSNRHHI 305
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 367 HFLFKIAHNGTLRHSSNRHHI 305
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 367 HFLFKIAHNGTLRHSSNRHHI 305
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 367 HFLFKIAHNGTLRHSSNRHHI 305
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RP+
Sbjct: 68  EPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPV 103



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RP+
Sbjct: 124 EPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPV 159



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RP+
Sbjct: 236 EPGNNRPVYIPQPRPPHPRLRREAKPEAKPGNNRPV 271


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 416 IGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGLLLE 520
           IG+  + K+TR  LP+G +KVL  + + +  L+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RP+
Sbjct: 69  EPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPV 104



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RPI
Sbjct: 41  EPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPI 76


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 DPGRGAPLAVVHFRDPYKFKTRKELFIAPEGSHRPI 267
           +PG   P+ +   R P+    R+    A  G++RP+
Sbjct: 124 EPGNNRPVYIPQPRPPHPRLRREAKPEAEPGNNRPV 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,877
Number of Sequences: 438
Number of extensions: 5649
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)