Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0477
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   146   1e-35
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             143   1e-34
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   138   3e-33
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    47   1e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    47   1e-05
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   4e-05
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e...    32   0.54 
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e...    32   0.54 
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    29   5.0  
At3g61210.1 68416.m06850 embryo-abundant protein-related similar...    28   6.6  
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ...    28   8.8  

>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  146 bits (355), Expect = 1e-35
 Identities = 74/158 (46%), Positives = 98/158 (62%)
 Frame = +2

Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
           +TGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  +GDRG LARASG++A VI HNP+
Sbjct: 84  YTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPE 143

Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
           +  TRVKLPSG+KK+LPS+ R M+G +         F K        ++      +    
Sbjct: 144 SNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGV 203

Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
                         QHIG ASTV+R  SAG KVG IAA
Sbjct: 204 AMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAA 241



 Score =  122 bits (294), Expect = 3e-28
 Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 186
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 187 VVHFRDPYKFKTRKELFIAPEGSH 258
            V FR P+++  +KELF+A EG +
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMY 84



 Score =  101 bits (241), Expect = 8e-22
 Identities = 41/48 (85%), Positives = 42/48 (87%)
 Frame = +1

Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
           VAGGGR +KP  KAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNH
Sbjct: 170 VAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNH 217


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  143 bits (347), Expect = 1e-34
 Identities = 74/158 (46%), Positives = 95/158 (60%)
 Frame = +2

Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
           +TGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  +GDRG LARASG++A VI HNPD
Sbjct: 83  YTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPD 142

Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
           +  TR+KLPSG+KK++PS  R M+G +           K        R    +       
Sbjct: 143 SDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGV 202

Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
                         QHIG ASTV+R    G+KVGLIAA
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240



 Score =  130 bits (313), Expect = 1e-30
 Identities = 60/83 (72%), Positives = 69/83 (83%)
 Frame = +1

Query: 10  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
           V FR P++FK +KELF+A EG +
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMY 83



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 40/48 (83%), Positives = 43/48 (89%)
 Frame = +1

Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
           VAGGGR +KP+ KAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNH
Sbjct: 169 VAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNH 216


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  138 bits (335), Expect = 3e-33
 Identities = 71/158 (44%), Positives = 92/158 (58%)
 Frame = +2

Query: 254 HTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 433
           +TGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  +GDRG  ARASG++A VI HNPD
Sbjct: 83  YTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPD 142

Query: 434 AKRTRVKLPSGAKKVLPSSNRGMVGLLLEVDVLTNLFXKLEGHTTSTRSNVTAGHMYXXX 613
              +R+KLPSG+KK++PS  R M+G +           K        R            
Sbjct: 143 NDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGV 202

Query: 614 XXXXXXXXXXXXXIQHIGKASTVKRGTSAGRKVGLIAA 727
                         QHIG ASTV+R    G+KVGLIAA
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAA 240



 Score =  130 bits (313), Expect = 1e-30
 Identities = 60/83 (72%), Positives = 69/83 (83%)
 Frame = +1

Query: 10  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 189
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 190 VHFRDPYKFKTRKELFIAPEGSH 258
           V FR P++FK +KELF+A EG +
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMY 83



 Score =  101 bits (242), Expect = 6e-22
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 511 VAGGGRIDKPIXKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNH 654
           VAGGGR +KP+ KAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNH
Sbjct: 169 VAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNH 216


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 299 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 478
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 479 LPSSNRGMVG 508
           + +  R  +G
Sbjct: 118 INAKCRATIG 127



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +1

Query: 571 YKVKRNCW----PYVRGVAMNPVEHPHGGG 648
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 299 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 478
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 479 LPSSNRGMVG 508
           + +  R  +G
Sbjct: 118 INAKCRATIG 127



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +1

Query: 571 YKVKRNCW----PYVRGVAMNPVEHPHGGG 648
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 568 KYKVKRNCWPYVRGVAM-NPVEHPHGG 645
           K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 377

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 600 IWPAVTFDLVLVVCPSSFXNRFVNTSTSSNKPTMPLLLDGRTFLAP 463
           +W ++ FDLV V+C SSF   F++T    +KP    L+D   +  P
Sbjct: 56  VWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYSCYKPP 100


>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 497

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 600 IWPAVTFDLVLVVCPSSFXNRFVNTSTSSNKPTMPLLLDGRTFLAP 463
           +W ++ FDLV V+C SSF   F++T    +KP    L+D   +  P
Sbjct: 56  VWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYSCYKPP 100


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 572 YLWYALPAFXIGL--SIRPPPATNRPCLCCLMAEPSWLQTVALL 447
           Y+WYALP + IGL  ++     T+ P    L   PS L  V  +
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFM 344


>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 261

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 639 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFXNRFVNTSTSSNKPTMPLLLDG 481
           V+ + R  G    +W  V  DL++     S   R V+++     PTM L  DG
Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175


>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 733

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 516 WRWTY*QTYXESWKGIPQVQG 578
           W W+Y  T+  +W  +P +QG
Sbjct: 74  WSWSYWSTFLLTWAVVPLIQG 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,491
Number of Sequences: 28952
Number of extensions: 441653
Number of successful extensions: 1148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)