Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0476
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25850.1 68418.m03067 F-box family protein contains F-box dom...    28   6.0  
At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   7.9  
At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi...    28   7.9  

>At5g25850.1 68418.m03067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 532 YF*CLVLVL-TCDSPLCLSLYGSMLIDPERNGI-VLETLLTFALGY*ADSIFLRPLTDCK 705
           YF  L L L  C++ + L L+   L+DPE   +  L+ +    + +  D+ F R ++ C 
Sbjct: 130 YFHELPLSLYVCETLVSLKLFHLTLVDPEFVSLPCLKIMHLNYVWFPNDATFERLVSSCP 189

Query: 706 V*ASIARDVMW 738
           V   +  DV+W
Sbjct: 190 VLEDLKIDVLW 200


>At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase 1
           [SP|Q96330], gibberellin 20-oxidase [GI:9791186];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 316

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 290 RDFKFRRNKKVMIYTSTFNSPARERDGNISEYTHI 186
           R F    ++K+ + +  F  P RE+ G  +E TH+
Sbjct: 104 RFFDLPADEKMHLVSDNFQEPVREKVGKYAEATHV 138


>At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].;
          Length = 1179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 704 LQSVSGLKKILSAQYPNANVNKVSRTIPF-LSGSINIEPYRDKQRGESQVXXXXXXXXXX 528
           L SV   +K   +++PN N++  S+T P  ++GS N+EP+      E Q+          
Sbjct: 81  LCSVLAWQKSYKSRFPNGNLSH-SKTQPSDIAGSSNVEPH------EPQIPTIYYASRTH 133

Query: 527 XXXHQLGRDYKQT 489
               Q+ R+Y++T
Sbjct: 134 AQITQVIREYRKT 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,744
Number of Sequences: 28952
Number of extensions: 282594
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)