BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0475 (727 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 109 3e-25 SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 64 1e-11 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 5e-09 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 52 8e-08 SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 47 3e-06 SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 31 0.22 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.1 SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 3.6 SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 8.3 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 109 bits (263), Expect = 3e-25 Identities = 53/82 (64%), Positives = 64/82 (78%) Frame = +2 Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187 AF DAL+ IPLALAENSGLS I+AL+ VKAR V EN YLGIDC+ GSNDM+ VI+ Sbjct: 452 AFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDP 511 Query: 188 LHSKKQQIALATQLVKMILKID 253 L KKQQ+ LATQL +M+LK++ Sbjct: 512 LIGKKQQLLLATQLCRMVLKVN 533 >SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 546 Score = 64.5 bits (150), Expect = 1e-11 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = +2 Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGID--CMSKGSNDMKAMNV 178 + +G+A E +P ++EN+GL P D +S++ A EN +G+D C + G+ D K + Sbjct: 439 KQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGI 498 Query: 179 IESLHSKKQQIALATQLVKMILKID 253 + L +KK I LAT+ V +L +D Sbjct: 499 FDVLLAKKSAIRLATETVLTVLNVD 523 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 56.0 bits (129), Expect = 5e-09 Identities = 32/83 (38%), Positives = 48/83 (57%) Frame = +2 Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184 RAF +ALE IP+ LAEN+GL+ I ++E+++R A GI+ ++ NV++ Sbjct: 440 RAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQ 498 Query: 185 SLHSKKQQIALATQLVKMILKID 253 L I LA + KMI+KID Sbjct: 499 PLLVNISAIQLAAETTKMIMKID 521 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 52.0 bits (119), Expect = 8e-08 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +2 Query: 2 FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181 +RA DA+E IP L +N G +PI AL+E++A+ AE GID + DM V Sbjct: 435 YRAVADAIEIIPRTLVQNCGANPIKALTELRAKH-AEGQHSFGIDGETGRVVDMHEYGVW 493 Query: 182 ESLHSKKQQIALATQLVKMILKID--VSG 262 E K Q I A + ++L++D VSG Sbjct: 494 EPEAVKLQSIKTAIESACLLLRVDDIVSG 522 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 46.8 bits (106), Expect = 3e-06 Identities = 22/82 (26%), Positives = 47/82 (57%) Frame = +2 Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187 AF AL +P LA+N+G + ++++KA + N +G+D DM+A ++E+ Sbjct: 434 AFAKALSQLPTILADNAGFDSSELVAQLKAAHY-DGNDTMGLDMDEGEIADMRAKGILEA 492 Query: 188 LHSKKQQIALATQLVKMILKID 253 L K+ ++ ++ +++L++D Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVD 514 >SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit Cct6|Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 30.7 bits (66), Expect = 0.22 Identities = 20/82 (24%), Positives = 37/82 (45%) Frame = +2 Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187 A+ DAL IP LA NS DA+ V ++ A +G+D + D + + ++ Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAI--VALQEEASEGYKVGLDLKTGMPFDPEVEGIYDN 497 Query: 188 LHSKKQQIALATQLVKMILKID 253 + + AT + ++ +D Sbjct: 498 YRVIRHMLHSATVIASNLISVD 519 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 27.5 bits (58), Expect = 2.1 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Frame = +2 Query: 11 FGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYL-----------GIDCMSKGSN 157 F AL IP LA N+ + ++++A A N + G+D ++ Sbjct: 446 FAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIR 505 Query: 158 DMKAMNVIESLHSKKQQIALATQLVKMILKIDVS 259 D V+E SK + + A + IL+ID S Sbjct: 506 DNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTS 539 >SPBC3B9.03 |||signal recognition particle receptor alpha subunit Srp101|Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 26.6 bits (56), Expect = 3.6 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +1 Query: 544 ESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657 E LS K+ + H ++++ +++ ++C VK L+NK Sbjct: 259 EDLSPILKQMQEHLTKKNVANSIALELCESVKASLINK 296 >SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 25.4 bits (53), Expect = 8.3 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +2 Query: 20 ALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGI 133 ALEA+PL N L D L+E + A LGI Sbjct: 322 ALEALPLVSIPNESLDESDELAESLSDSEAARLQLLGI 359 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,983,165 Number of Sequences: 5004 Number of extensions: 59973 Number of successful extensions: 133 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 341222980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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