Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0475
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 109 3e-25
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 64 1e-11
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 5e-09
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 52 8e-08
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 47 3e-06
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 31 0.22
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 3.6
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 8.3
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 109 bits (263), Expect = 3e-25
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF DAL+ IPLALAENSGLS I+AL+ VKAR V EN YLGIDC+ GSNDM+ VI+
Sbjct: 452 AFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDP 511
Query: 188 LHSKKQQIALATQLVKMILKID 253
L KKQQ+ LATQL +M+LK++
Sbjct: 512 LIGKKQQLLLATQLCRMVLKVN 533
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGID--CMSKGSNDMKAMNV 178
+ +G+A E +P ++EN+GL P D +S++ A EN +G+D C + G+ D K +
Sbjct: 439 KQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGI 498
Query: 179 IESLHSKKQQIALATQLVKMILKID 253
+ L +KK I LAT+ V +L +D
Sbjct: 499 FDVLLAKKSAIRLATETVLTVLNVD 523
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 56.0 bits (129), Expect = 5e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
RAF +ALE IP+ LAEN+GL+ I ++E+++R A GI+ ++ NV++
Sbjct: 440 RAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQ 498
Query: 185 SLHSKKQQIALATQLVKMILKID 253
L I LA + KMI+KID
Sbjct: 499 PLLVNISAIQLAAETTKMIMKID 521
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 52.0 bits (119), Expect = 8e-08
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181
+RA DA+E IP L +N G +PI AL+E++A+ AE GID + DM V
Sbjct: 435 YRAVADAIEIIPRTLVQNCGANPIKALTELRAKH-AEGQHSFGIDGETGRVVDMHEYGVW 493
Query: 182 ESLHSKKQQIALATQLVKMILKID--VSG 262
E K Q I A + ++L++D VSG
Sbjct: 494 EPEAVKLQSIKTAIESACLLLRVDDIVSG 522
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/82 (26%), Positives = 47/82 (57%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF AL +P LA+N+G + ++++KA + N +G+D DM+A ++E+
Sbjct: 434 AFAKALSQLPTILADNAGFDSSELVAQLKAAHY-DGNDTMGLDMDEGEIADMRAKGILEA 492
Query: 188 LHSKKQQIALATQLVKMILKID 253
L K+ ++ ++ +++L++D
Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVD 514
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
A+ DAL IP LA NS DA+ V ++ A +G+D + D + + ++
Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAI--VALQEEASEGYKVGLDLKTGMPFDPEVEGIYDN 497
Query: 188 LHSKKQQIALATQLVKMILKID 253
+ + AT + ++ +D
Sbjct: 498 YRVIRHMLHSATVIASNLISVD 519
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Frame = +2
Query: 11 FGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYL-----------GIDCMSKGSN 157
F AL IP LA N+ + ++++A A N + G+D ++
Sbjct: 446 FAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIR 505
Query: 158 DMKAMNVIESLHSKKQQIALATQLVKMILKIDVS 259
D V+E SK + + A + IL+ID S
Sbjct: 506 DNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTS 539
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 544 ESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
E LS K+ + H ++++ +++ ++C VK L+NK
Sbjct: 259 EDLSPILKQMQEHLTKKNVANSIALELCESVKASLINK 296
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 20 ALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGI 133
ALEA+PL N L D L+E + A LGI
Sbjct: 322 ALEALPLVSIPNESLDESDELAESLSDSEAARLQLLGI 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,165
Number of Sequences: 5004
Number of extensions: 59973
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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