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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0475
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...   109   3e-25
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    64   1e-11
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    56   5e-09
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    52   8e-08
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    47   3e-06
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    31   0.22 
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    27   2.1  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   3.6  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.3  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score =  109 bits (263), Expect = 3e-25
 Identities = 53/82 (64%), Positives = 64/82 (78%)
 Frame = +2

Query: 8   AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
           AF DAL+ IPLALAENSGLS I+AL+ VKAR V EN  YLGIDC+  GSNDM+   VI+ 
Sbjct: 452 AFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDP 511

Query: 188 LHSKKQQIALATQLVKMILKID 253
           L  KKQQ+ LATQL +M+LK++
Sbjct: 512 LIGKKQQLLLATQLCRMVLKVN 533


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGID--CMSKGSNDMKAMNV 178
           + +G+A E +P  ++EN+GL P D +S++ A    EN   +G+D  C + G+ D K   +
Sbjct: 439 KQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGI 498

Query: 179 IESLHSKKQQIALATQLVKMILKID 253
            + L +KK  I LAT+ V  +L +D
Sbjct: 499 FDVLLAKKSAIRLATETVLTVLNVD 523


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 32/83 (38%), Positives = 48/83 (57%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
           RAF +ALE IP+ LAEN+GL+ I  ++E+++R  A      GI+       ++   NV++
Sbjct: 440 RAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQ 498

Query: 185 SLHSKKQQIALATQLVKMILKID 253
            L      I LA +  KMI+KID
Sbjct: 499 PLLVNISAIQLAAETTKMIMKID 521


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 2   FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181
           +RA  DA+E IP  L +N G +PI AL+E++A+  AE     GID  +    DM    V 
Sbjct: 435 YRAVADAIEIIPRTLVQNCGANPIKALTELRAKH-AEGQHSFGIDGETGRVVDMHEYGVW 493

Query: 182 ESLHSKKQQIALATQLVKMILKID--VSG 262
           E    K Q I  A +   ++L++D  VSG
Sbjct: 494 EPEAVKLQSIKTAIESACLLLRVDDIVSG 522


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 47/82 (57%)
 Frame = +2

Query: 8   AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
           AF  AL  +P  LA+N+G    + ++++KA    + N  +G+D       DM+A  ++E+
Sbjct: 434 AFAKALSQLPTILADNAGFDSSELVAQLKAAHY-DGNDTMGLDMDEGEIADMRAKGILEA 492

Query: 188 LHSKKQQIALATQLVKMILKID 253
           L  K+  ++  ++  +++L++D
Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVD 514


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +2

Query: 8   AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
           A+ DAL  IP  LA NS     DA+  V  ++ A     +G+D  +    D +   + ++
Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAI--VALQEEASEGYKVGLDLKTGMPFDPEVEGIYDN 497

Query: 188 LHSKKQQIALATQLVKMILKID 253
               +  +  AT +   ++ +D
Sbjct: 498 YRVIRHMLHSATVIASNLISVD 519


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
 Frame = +2

Query: 11  FGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYL-----------GIDCMSKGSN 157
           F  AL  IP  LA N+     +  ++++A   A  N  +           G+D ++    
Sbjct: 446 FAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIR 505

Query: 158 DMKAMNVIESLHSKKQQIALATQLVKMILKIDVS 259
           D     V+E   SK + +  A +    IL+ID S
Sbjct: 506 DNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTS 539


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 544 ESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
           E LS   K+ + H   ++++ +++ ++C  VK  L+NK
Sbjct: 259 EDLSPILKQMQEHLTKKNVANSIALELCESVKASLINK 296


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  ALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGI 133
           ALEA+PL    N  L   D L+E  +   A     LGI
Sbjct: 322 ALEALPLVSIPNESLDESDELAESLSDSEAARLQLLGI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,165
Number of Sequences: 5004
Number of extensions: 59973
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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