Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0475
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 117 8e-27
10_08_0620 - 19321612-19323237 58 5e-09
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 58 9e-09
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 54 1e-07
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 50 2e-06
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 49 3e-06
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 46 2e-05
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 43 2e-04
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 43 2e-04
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 35 0.057
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 32 0.53
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 29 2.8
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 29 5.0
01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375 28 8.7
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 117 bits (282), Expect = 8e-27
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
R+F DAL+AIPLALAENSGLSPID L+ VK++QV E+NP+ GIDC G+N MK NV E
Sbjct: 445 RSFADALDAIPLALAENSGLSPIDTLTAVKSQQVKESNPHCGIDCNDVGTNHMKEQNVFE 504
Query: 185 SLHSKKQQIALATQLVKMILKID 253
+L K+QQI LATQ+VKMILKID
Sbjct: 505 TLIGKQQQILLATQVVKMILKID 527
>10_08_0620 - 19321612-19323237
Length = 541
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
R F +ALE IP LAEN+GL PI ++E++ R A+ GI+ ++ NV++
Sbjct: 454 REFAEALEVIPYTLAENAGLDPISTVTELRNRH-AKGEKNAGINVRKGRITNILEENVVQ 512
Query: 185 SLHSKKQQIALATQLVKMILKID 253
L + LA + V+MILKID
Sbjct: 513 PLLVSTSAVTLACECVRMILKID 535
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
+ F +ALE IP LAEN+GL+PI ++E++ R A+ GI+ ++ NV++
Sbjct: 463 KEFAEALEVIPYTLAENAGLNPISIVTELRNRH-AKGEKNAGINVRKGQITNILEENVVQ 521
Query: 185 SLHSKKQQIALATQLVKMILKID 253
L I LA + V+MILKID
Sbjct: 522 PLLVSTSAITLACECVRMILKID 544
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF AL+AIP +A+N+GL + +S+++A EN GID ++ DM+ + E+
Sbjct: 431 AFSRALQAIPTIIADNAGLDSAELISQLRAEHHKENCT-AGIDVITGSVGDMQKRGISEA 489
Query: 188 LHSKKQQIALATQLVKMILKID 253
K+ + AT+ +MIL++D
Sbjct: 490 FKVKQAILLSATEAAEMILRVD 511
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGS----------- 154
AF AL++IP +A+N+GL D +S+++A E + GID +S G
Sbjct: 408 AFSRALQSIPTIIADNAGLDSADLISQLRAEHHKEQST-AGIDVISGGGLELILRLLPQV 466
Query: 155 NDMKAMNVIESLHSKKQQIALATQLVKMILKID 253
DM+ + + ES +K+ + AT+ +MIL++D
Sbjct: 467 GDMEKLGISESFKAKQAVLMSATEAAEMILRVD 499
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181
+ A A EAIP L +N GL+ I +++++ + N ++GID S DMK +
Sbjct: 439 YEAAALAFEAIPRTLLQNCGLNVIRTMTQLQGKHANGENAWVGIDGSSGDIVDMKERKIW 498
Query: 182 ESLHSKKQQIALATQLVKMILKID--VSG 262
+S K Q A + M+L+ID VSG
Sbjct: 499 DSYSVKAQTFKTAIEAACMLLRIDDIVSG 527
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +2
Query: 2 FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAE---NNPYLGIDCMSKGSNDMKAM 172
+ A A EAIP LA+N GL+ I +++++ + + N ++GID S DMK
Sbjct: 439 YEAAALAFEAIPRTLAQNCGLNVIRIMTQLQGKDMLHANGENAWVGIDGRSGDIVDMKER 498
Query: 173 NVIESLHSKKQQIALATQLVKMILKID--VSG 262
+ +S K Q A + M+L+ID VSG
Sbjct: 499 KIWDSYSVKAQTFKTAIEAACMLLRIDDIVSG 530
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
+F ALE IP L +N+G D L++++ + + G+D + G D A V E
Sbjct: 440 SFAKALEVIPRQLCDNAGFDATDVLNKLRQKHASGEGANFGVDINTGGIADSFANFVWEP 499
Query: 188 LHSKKQQIALATQLVKMILKID 253
K I AT+ +IL +D
Sbjct: 500 AVVKINAINAATEAACLILSVD 521
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +2
Query: 11 FGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIESL 190
F ++ E +P LAEN+GLS ++ +S + A A N +GID G D+ M + +
Sbjct: 439 FAESFEMVPRTLAENAGLSAMEIISSLYAEH-AGGNTKVGIDLEEGGCKDVSIMKIWDLY 497
Query: 191 HSKKQQIALATQLVKMILKID 253
+K + + +L++D
Sbjct: 498 VTKLFALKYSADAACTVLRVD 518
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 35.1 bits (77), Expect = 0.057
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF DAL IP LAENSGL D + V + + +G++ S D + + ++
Sbjct: 459 AFADALLVIPKTLAENSGLDTQDVI--VSLQNEHDRGLVVGLNHHSGEPIDPQMEGIFDN 516
Query: 188 LHSKKQQIALATQLVKMILKID 253
K+Q I + +L +D
Sbjct: 517 YSVKRQIINSGPIIASQLLLVD 538
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 104 VAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIDVSGHLQTPSN 283
+AE YL + + S+ ++ + L+ +KQ+I LA Q VK ++K+D + S+
Sbjct: 655 LAEGTKYLKL-LQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDEN---SPDSH 710
Query: 284 KCIL 295
+C++
Sbjct: 711 RCLI 714
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
A GD + P ALAEN G D ++ A A N ++G D S V+ES
Sbjct: 574 AGGDGDKPAPAALAENVGAVMSDP-NKFSAAIAAAINNFMGKDGESSSGKSSSKWGVVES 632
Query: 188 L 190
L
Sbjct: 633 L 633
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 360 SGTLQMSITKDFCSTKPQLSNYNMHLFDGVCR*PDTSILSIILTSWVARAICCFF 196
S + M+ FC + +N ++ F +C PDT L + L S + RA F+
Sbjct: 34 SSLITMAQASPFCGKPNEDANAHLQQFLEICSIPDTVRLRLFLFSLLGRAKQWFY 88
>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
Length = 241
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -1
Query: 727 TMELNLVLMKFITLNQIKLRWIKIYLRVYF*RVNTFCMKGPYSWIWINH 581
T+ +LV + F +QIK W++ Y ++ V C+ G ++++ +H
Sbjct: 177 TVMTSLVALSFYGASQIKFHWVERYDKILVGSV--LCLVGVLTYVFHHH 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,715
Number of Sequences: 37544
Number of extensions: 351233
Number of successful extensions: 624
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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