Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0475
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  77   2e-14
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)            66   2e-11
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   49   4e-06
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.014
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       33   0.18 
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)                       31   1.3  
SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)                     30   1.7  
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       30   2.2  
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 29   2.9  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   2.9  
SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)                    29   2.9  
SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_26040| Best HMM Match : AFP (HMM E-Value=5.5)                       28   6.7  
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 28   8.9  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/51 (64%), Positives = 42/51 (82%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSN 157
           RA+ DAL+ IPLALAENSGL+PI  ++++K+RQVAE NP LG+DCM  G N
Sbjct: 447 RAYADALDNIPLALAENSGLNPIQTVADIKSRQVAEKNPRLGVDCMDSGIN 497


>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
          Length = 206

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGID 136
           RA+ DAL+ IPLALAENSGL+PI  ++++K+RQVAE NP LG+D
Sbjct: 162 RAYADALDNIPLALAENSGLNPIQTVADIKSRQVAEKNPGLGVD 205


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
           RAF +ALE IP  LAEN+GL+PI  ++E++ R  A+     GI+       ++   NV++
Sbjct: 132 RAFAEALEIIPYTLAENAGLNPIATVTELRNRH-AQGEVTAGINVRKGTVTNILEENVLQ 190

Query: 185 SLHSKKQQIALATQLVKMILKI-DVSGHLQTP 277
            L      + LA++ V+ ILKI D+   L TP
Sbjct: 191 PLLVSTSAVQLASETVRSILKIDDIVSELATP 222


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/82 (26%), Positives = 46/82 (56%)
 Frame = +2

Query: 8   AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
           +F  AL  +P  +A+N+G    D +++++A      N Y G++ ++    DM+ + + ES
Sbjct: 435 SFATALRQLPTIIADNAGYDSADLVAKLRAAHTQGKNTY-GLNMVNGTVGDMRDLGITES 493

Query: 188 LHSKKQQIALATQLVKMILKID 253
              K+Q +  A +  +MI+++D
Sbjct: 494 YQVKRQVLLSAAEAAEMIVRVD 515


>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 42/74 (56%)
 Frame = +2

Query: 32  IPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQI 211
           +P  +A+N+G    D +++++A      N Y G++ ++    DM+ + + ES   K+Q +
Sbjct: 1   LPTIIADNAGYDSADLVAKLRAAHTQGKNTY-GLNMVNGTVGDMRDLGITESYQVKRQVL 59

Query: 212 ALATQLVKMILKID 253
             A +  +MI+++D
Sbjct: 60  LSAAEAAEMIVRVD 73


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 28/92 (30%), Positives = 46/92 (50%)
 Frame = +2

Query: 2   FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181
           ++A    LE IP  L +N G + I  ++ ++A+  AE N   GID  S    DM+ + V 
Sbjct: 226 YKAVAKGLEVIPRTLIQNCGANTIRTITALRAKHAAEGNTSWGIDGESGQIVDMQELGVW 285

Query: 182 ESLHSKKQQIALATQLVKMILKIDVSGHLQTP 277
           ++   K Q    A +  K +L +D   H ++P
Sbjct: 286 DTYAVKAQTFKTALE-KKSLLDVD---HYRSP 313


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +2

Query: 5   RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMS 145
           +AF DAL  IP  LA+NSG  P + + ++   + A++N  +G+D  S
Sbjct: 360 KAFADALLVIPKTLAQNSGFDPQETMVKL-LEEYADSNTPVGVDLSS 405


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = -2

Query: 468 IALSCSTCTIMQLHLIIEYTQLLKQP*EHPLHTFYHSGTLQMSITKDFCSTKPQLSNYNM 289
           + L C+T T+  L  I +  Q+ K P  +PLH     G  QMS T +  S   Q SN N 
Sbjct: 268 VILFCTTVTLSVL-FIPKVIQMWKDPDGNPLHGTMIPGRGQMSSTGNELSVVEQFSNKNS 326

Query: 288 HL 283
            L
Sbjct: 327 RL 328


>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 189

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
 Frame = +2

Query: 11  FGDALEAIPLALAENSGLSPIDALSEVKA----RQV-AENN--PYLGIDCMSKGSNDMKA 169
           F ++L  IP  L+ N+     D +++++A     Q+ AE +   ++G+D +     D K 
Sbjct: 76  FANSLLVIPKILSVNAAKDSADLVAKLRAFHNTSQINAERSHLKWIGLDLVEGTVRDNKK 135

Query: 170 MNVIESLHSKKQQIALATQLVKMILKIDVSGHLQTPSNK 286
             V E    K + +  AT+    IL+ID    L TP  K
Sbjct: 136 AGVFEPAICKIKSLKFATEAAITILRIDDMIKL-TPEKK 173


>SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)
          Length = 330

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 541 LESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
           L+S+  K K YR+H  S++    ++YK  S   + L+NK
Sbjct: 58  LKSIKHKQKMYRNHFFSKNQEKVIAYKQYSNTLSHLLNK 96


>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
 Frame = -2

Query: 456  CSTCTIMQLHLIIEYTQLLKQP*EHPLHT-----FYHS---GTLQMSITKDFCSTK--PQ 307
            C T  + Q+H    +T LLKQ   +  HT      +H+    TL      + C T    Q
Sbjct: 837  CHTTLLKQVHHHQCHTTLLKQAHHNQCHTTLLKQLHHNQCHTTLLKQAHHNQCHTTLLKQ 896

Query: 306  LSNYNMHLFDGVCR*PDTSILSIILTSWVARAICCFFECNDSITFIAFMSFEPF 145
            + +   H    V   P T ++ ++  S  ++A C       ++  +A +S +PF
Sbjct: 897  VHHNKCHTIKMVREFPTTVVMKMMTKSPASKATCALLREERTLCSLARLSRDPF 950


>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 541 LESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
           L+S+  K K YR H  S++    ++YK  S   + L+NK
Sbjct: 219 LKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNK 257


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 360 SGTLQMSITKDFCSTKPQLSNYNMHLF----DGVC 268
           +GTL  S+ KDF  T P    Y+  LF    +GVC
Sbjct: 645 TGTLNRSVDKDFADTTPSNEPYSADLFLQHDNGVC 679


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 541 LESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
           L+S+  K K YR H  S++    ++YK  S   + L+NK
Sbjct: 390 LKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNK 428


>SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 541 LESLSSKAKEYRHHD*SRSMSMALSYKMCSLVKNKLVNK 657
           L+S+  K K YR H  S++    ++YK  S   + L+NK
Sbjct: 58  LKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNK 96


>SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 11 FGDALEAIPLALAENSGLSPIDALSEVKA 97
          F ++LE +P ALA+N+G+   + +S++ A
Sbjct: 13 FAESLECVPRALADNAGVKATELISKLYA 41


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 453 STCTIMQLHLIIEYTQLLKQP*EHPLHTFYHSG---TLQMSITKDFC 322
           +TCT          T +L Q  + PL+ FY++G   T   + T DFC
Sbjct: 403 TTCTTGDFCFTTRTTGILSQDTQTPLNNFYNTGYPDTQNTTCTGDFC 449


>SB_26040| Best HMM Match : AFP (HMM E-Value=5.5)
          Length = 207

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 453 STCTIMQLHLIIEYTQLLKQP*EHPLHTFYHSG---TLQMSITK-DFCST 316
           +TCT       I  T +L Q  + PL+ FY++G   T   + T  DFC T
Sbjct: 93  TTCTTGHFCFTIRTTGILSQDTQTPLNNFYNTGYPDTQNTTCTTGDFCFT 142


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 453 STCTIMQLHLIIEYTQLLKQP*EHPLHTFYHSG---TLQMSITK-DFCST 316
           +TCT     L    T +L Q  + PL+ FY++G   T   + T  DFC T
Sbjct: 60  TTCTTGDFCLTTRTTGILSQDTQTPLNNFYNTGYPDTQNTTCTTGDFCFT 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,024
Number of Sequences: 59808
Number of extensions: 440159
Number of successful extensions: 813
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)