Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0475
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 112 2e-25
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 112 2e-25
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 59 3e-09
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 58 4e-09
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 49 4e-06
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 48 5e-06
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 39 0.004
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 35 0.063
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 33 0.25
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 33 0.25
At1g21170.1 68414.m02647 expressed protein 29 2.4
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con... 29 4.1
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 112 bits (270), Expect = 2e-25
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
RAF +AL+++P+ALAENSGL PI+ LS VK++Q+ EN P+ GIDC G+NDM+ NV E
Sbjct: 369 RAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFE 428
Query: 185 SLHSKKQQIALATQLVKMILKID 253
+L K+QQI LATQ+VKMILKID
Sbjct: 429 TLIGKQQQILLATQVVKMILKID 451
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 112 bits (270), Expect = 2e-25
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
RAF +AL+++P+ALAENSGL PI+ LS VK++Q+ EN P+ GIDC G+NDM+ NV E
Sbjct: 445 RAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFE 504
Query: 185 SLHSKKQQIALATQLVKMILKID 253
+L K+QQI LATQ+VKMILKID
Sbjct: 505 TLIGKQQQILLATQVVKMILKID 527
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 58.8 bits (136), Expect = 3e-09
Identities = 39/78 (50%), Positives = 49/78 (62%)
Frame = +2
Query: 20 ALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSK 199
+L +IP+ALA NSGL PI+ LS VK++Q+ EN P+ GIDC ND
Sbjct: 77 SLRSIPMALALNSGLQPIETLSAVKSQQIKENIPFYGIDC-----ND------------- 118
Query: 200 KQQIALATQLVKMILKID 253
QQI LATQ+VK I+KID
Sbjct: 119 -QQIVLATQVVK-IIKID 134
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/83 (38%), Positives = 50/83 (60%)
Frame = +2
Query: 5 RAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIE 184
++F +ALE IP LAEN+GL+PI ++E++ + A+ GI+ ++ NV++
Sbjct: 449 KSFAEALEVIPYTLAENAGLNPIAIVTELRNKH-AQGEINAGINVRKGQITNILEENVVQ 507
Query: 185 SLHSKKQQIALATQLVKMILKID 253
L I LAT+ V+MILKID
Sbjct: 508 PLLVSTSAITLATECVRMILKID 530
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF AL AIP +A+N+GL + +++++A E GID ++ DM+ + E+
Sbjct: 433 AFSRALVAIPTTIADNAGLDSAELVAQLRAEHHTE-GCNAGIDVITGAVGDMEERGIYEA 491
Query: 188 LHSKKQQIALATQLVKMILKID 253
K+ + AT+ +MIL++D
Sbjct: 492 FKVKQAVLLSATEASEMILRVD 513
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 FRAFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVI 181
+ A A EAIP LA+N G++ I ++ ++ + N + GID + DMK +
Sbjct: 437 YEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGAIADMKESKIW 496
Query: 182 ESLHSKKQQIALATQLVKMILKID--VSG 262
+S + K Q A + M+L+ID VSG
Sbjct: 497 DSYNVKAQTFKTAIEAACMLLRIDDIVSG 525
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVK---ARQVAENNPYLGIDCMSKGSNDMKAMNV 178
++ ALE IP L +N+G D L++++ A Q E Y G+D + G D A V
Sbjct: 440 SYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAMQSGEGASY-GVDINTGGIADSFANFV 498
Query: 179 IESLHSKKQQIALATQLVKMILKID 253
E K I AT+ +IL +D
Sbjct: 499 WEPAVVKINAINAATEAACLILSVD 523
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 34.7 bits (76), Expect = 0.063
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF +AL +P LAEN+GL D + + + + +G+D D + + ++
Sbjct: 443 AFANALLVVPKTLAENAGLDTQDVIISLTSEH--DKGNIVGLDLQDGEPVDPQLAGIFDN 500
Query: 188 LHSKKQQIALATQLVKMILKID 253
K+Q I + +L +D
Sbjct: 501 YSVKRQLINSGPVIASQLLLVD 522
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 8 AFGDALEAIPLALAENSGLSPIDALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIES 187
AF +AL +P LAEN+GL D + + + + +G++ D + + ++
Sbjct: 442 AFANALLVVPKTLAENAGLDTQDVIISLTSEH--DKGNVVGLNLQDGEPIDPQLAGIFDN 499
Query: 188 LHSKKQQIALATQLVKMILKID 253
K+Q I + +L +D
Sbjct: 500 YSVKRQLINSGPVIASQLLLVD 521
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +2
Query: 11 FGDALEAIPLALAENSGLSPIDALSEVKA-----RQVAENNPY--LGIDCMSKGSNDMKA 169
F DAL IP LA N+ + +++++A + A+ Y +G+D ++ +
Sbjct: 444 FADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTIRNNLE 503
Query: 170 MNVIESLHSKKQQIALATQLVKMILKID 253
VIE SK + I AT+ IL+ID
Sbjct: 504 AGVIEPAMSKVKIIQFATEAAITILRID 531
>At1g21170.1 68414.m02647 expressed protein
Length = 1090
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 77 ALSEVKARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIDV 256
ALS+ K RQ+ +N L D S N ++ +E +++++ AL + +K++ + V
Sbjct: 472 ALSDAKWRQIQQNGVQLSDDTSSMEDNQVQVDQPLEE-SARREKDALRGRYIKILTAVIV 530
Query: 257 SGHLQT 274
HL T
Sbjct: 531 Y-HLPT 535
>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 938
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 375 HTFYHSG-TLQMSITKDFCSTKPQLSNYNMHLFDGVCR*PDTSIL-SIILTSW 223
H ++ G TL K KP+L Y HLF C D ++L + +L W
Sbjct: 658 HRYFDDGATLVRDFVKALGWGKPRLCEYTGHLFCSSCHTNDMAVLPATVLHHW 710
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,018
Number of Sequences: 28952
Number of extensions: 303571
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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