BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0474 (738 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 96 5e-21 SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 74 2e-14 SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 26 4.9 SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 6.4 >SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 95.9 bits (228), Expect = 5e-21 Identities = 60/168 (35%), Positives = 85/168 (50%) Frame = +2 Query: 5 KPEYDSLAKVKTILVDEKKHIRFGDWSAVXX*SFK*IPVPNFKTRSIPR*FI*KGLH*KK 184 K E + KV L + K+ IR GDWS + + K + +K Sbjct: 183 KEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQK 242 Query: 185 EQMVTKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGY 364 + + K ++ + P + + E +L + E + K+ S L KIIV GY Sbjct: 243 NKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGY 302 Query: 365 KALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVM 508 AL L +FT G DEV++WTI+KGTKAPQAAG IHTDFEK F++ E+M Sbjct: 303 NALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIM 350 Score = 80.2 bits (189), Expect = 3e-16 Identities = 30/52 (57%), Positives = 44/52 (84%) Frame = +3 Query: 96 IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIP 251 +E++N LT+KP +YLVN+SE+D++R+KNK+LPK+K+WID+N PG LIP Sbjct: 213 VEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIP 264 Score = 45.6 bits (103), Expect = 7e-06 Identities = 23/53 (43%), Positives = 33/53 (62%) Frame = +1 Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRR 639 + F G ++D + TE AC+AAGKY +G+ YV+E GDI +K AG+R Sbjct: 342 KAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWK--AGKR 392 >SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 407 Score = 74.1 bits (174), Expect = 2e-14 Identities = 37/83 (44%), Positives = 49/83 (59%) Frame = +2 Query: 260 VLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGT 439 + E +L + P E G S L +II GY AL L ++FTA V+AWTI G+ Sbjct: 284 LFEEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTASEKIVQAWTIADGS 343 Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508 KAP AAG IH+DF+K F+ EV+ Sbjct: 344 KAPDAAGIIHSDFKKKFVAGEVI 366 Score = 54.0 bits (124), Expect = 2e-08 Identities = 22/52 (42%), Positives = 34/52 (65%) Frame = +3 Query: 96 IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIP 251 I +LN LT+KP +YLVN+ + DY+ + + L +KEW++KN G +IP Sbjct: 229 IPILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQVIP 280 Score = 44.8 bits (101), Expect = 1e-05 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +1 Query: 478 REGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFK 621 ++ F G F DF++ + ACK+ GK + +G++Y VE GDIIF+K Sbjct: 357 KKKFVAGEVIKFSDFEKYKSVDACKSVGKCKTKGKDYTVEPGDIIFWK 404 >SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 26.2 bits (55), Expect = 4.9 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 239 SSDSIPGVLESKLLDMDPTERVSYLKE 319 SS S P +S +LD DP+ +SYLK+ Sbjct: 125 SSPSKPPHPDSHILDDDPSAMLSYLKK 151 >SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit Rpa2|Schizosaccharomyces pombe|chr 2|||Manual Length = 1227 Score = 25.8 bits (54), Expect = 6.4 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = -3 Query: 502 FGHDETLLEVGVDTSCGLRSLCAFLNCPGF--DFICSSCEEILQLQSLISLN 353 FG E +G TS ++ +NC + ++C C I+ + S IS+N Sbjct: 1109 FGEMERDAVIGHGTSFLMQD--RLMNCSDYAQSWVCRDCGSIISIMSTISMN 1158 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,906,168 Number of Sequences: 5004 Number of extensions: 61523 Number of successful extensions: 186 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 186 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 349251756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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