Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0474
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    96   5e-21
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    74   2e-14
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   4.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.4  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 60/168 (35%), Positives = 85/168 (50%)
 Frame = +2

Query: 5   KPEYDSLAKVKTILVDEKKHIRFGDWSAVXX*SFK*IPVPNFKTRSIPR*FI*KGLH*KK 184
           K E   + KV   L + K+ IR GDWS         + +   K          +    +K
Sbjct: 183 KEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQK 242

Query: 185 EQMVTKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGY 364
            + + K ++   +  P  +   +    E +L +    E +   K+    S L KIIV GY
Sbjct: 243 NKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGY 302

Query: 365 KALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVM 508
            AL L  +FT G DEV++WTI+KGTKAPQAAG IHTDFEK F++ E+M
Sbjct: 303 NALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIM 350



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 30/52 (57%), Positives = 44/52 (84%)
 Frame = +3

Query: 96  IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIP 251
           +E++N    LT+KP +YLVN+SE+D++R+KNK+LPK+K+WID+N PG  LIP
Sbjct: 213 VEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIP 264



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRR 639
           + F  G    ++D  +  TE AC+AAGKY  +G+ YV+E GDI  +K  AG+R
Sbjct: 342 KAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWK--AGKR 392


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 37/83 (44%), Positives = 49/83 (59%)
 Frame = +2

Query: 260 VLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGT 439
           + E +L  + P E        G  S L +II  GY AL L ++FTA    V+AWTI  G+
Sbjct: 284 LFEEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTASEKIVQAWTIADGS 343

Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508
           KAP AAG IH+DF+K F+  EV+
Sbjct: 344 KAPDAAGIIHSDFKKKFVAGEVI 366



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +3

Query: 96  IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIP 251
           I +LN    LT+KP +YLVN+ + DY+  + + L  +KEW++KN  G  +IP
Sbjct: 229 IPILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQVIP 280



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +1

Query: 478 REGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFK 621
           ++ F  G    F DF++  +  ACK+ GK + +G++Y VE GDIIF+K
Sbjct: 357 KKKFVAGEVIKFSDFEKYKSVDACKSVGKCKTKGKDYTVEPGDIIFWK 404


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 239 SSDSIPGVLESKLLDMDPTERVSYLKE 319
           SS S P   +S +LD DP+  +SYLK+
Sbjct: 125 SSPSKPPHPDSHILDDDPSAMLSYLKK 151


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 502  FGHDETLLEVGVDTSCGLRSLCAFLNCPGF--DFICSSCEEILQLQSLISLN 353
            FG  E    +G  TS  ++     +NC  +   ++C  C  I+ + S IS+N
Sbjct: 1109 FGEMERDAVIGHGTSFLMQD--RLMNCSDYAQSWVCRDCGSIISIMSTISMN 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,168
Number of Sequences: 5004
Number of extensions: 61523
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)