Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0474
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 98 6e-21
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 82 4e-16
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891... 30 1.7
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 30 2.2
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 3.9
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 29 3.9
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 29 5.1
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 29 5.1
09_03_0110 + 12432562-12432801,12432811-12433419 28 6.7
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 28 6.7
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 28 8.9
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 28 8.9
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 98.3 bits (234), Expect = 6e-21
Identities = 68/172 (39%), Positives = 84/172 (48%), Gaps = 3/172 (1%)
Frame = +2
Query: 2 LKPEYDSLAKVKTILVDEKKHIRFGDWSAVXX*SFK*IPVPNFKTRSIPR*FI*KGLH*K 181
LK E++ KVK L D K +RFGDW + + K K K
Sbjct: 153 LKLEHELCEKVKAHLEDGKD-VRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRK 211
Query: 182 KEQMVTKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITS---ALDKII 352
K + + K Q+ + E L DM P E Y E+ I + KII
Sbjct: 212 KNKFLPKIHAWV-QEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIARQAIVIPKII 270
Query: 353 VQGYKALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVM 508
G+ A+ L YFFTAG DEVK W I++ TKAPQAAG IHTDFE+GFI AEVM
Sbjct: 271 KTGFAAIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVM 322
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +3
Query: 96 IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIPF 254
IE+LN + LT+KP +YLVN+SEKDY RKKNK+LPK+ W+ ++ G +IPF
Sbjct: 183 IEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHG-GETIIPF 234
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/48 (64%), Positives = 36/48 (75%)
Frame = +1
Query: 484 GFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFN 627
GF F D KE G+E+A KAAGKYRQ+G+ YVV+DGDIIFFKFN
Sbjct: 315 GFICAEVMKFDDLKELGSESAVKAAGKYRQEGKTYVVQDGDIIFFKFN 362
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 82.2 bits (194), Expect = 4e-16
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 SIPGVLESKLLDMDPTERVSYLKEHGIT-SALDKIIVQGYKALQLEYFFTAGADEVKAWT 424
+I +E++L ++ ERV YLK G+T S L ++ Y L L +FT G E KAWT
Sbjct: 360 TISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRTYFTTGDKETKAWT 419
Query: 425 IQKGTKAPQAAGRIHTDFEKGFIMAEVM 508
I G APQAAG IH+DF+KGFI AE +
Sbjct: 420 ILAGMTAPQAAGVIHSDFQKGFIRAETV 447
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +1
Query: 478 REGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFN 627
++GF + + DF G+ + G R +G++Y+V++GD++ F+FN
Sbjct: 438 QKGFIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYIVQEGDVMLFRFN 487
>04_03_0685 +
18687520-18687787,18688637-18688725,18689102-18689195,
18689237-18689304,18690300-18690383,18690458-18690745,
18691474-18691626
Length = 347
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 347 SCPMHSLCRVPSSKRHVQSDPCPA 276
S P+ LC +PSS+ H +DP P+
Sbjct: 51 SNPVRHLCGIPSSRCHAAADPAPS 74
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 585 ITTLLPVFSGGFTRSFGTLFLEVLEI--MTSAMMKPFSKSVWIRPAA*GAF 439
IT + PVF+ G F EI +T M PFSKS+W AA AF
Sbjct: 962 ITVVTPVFNEGKVIFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAF 1012
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +1
Query: 409 SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHDFK-----DFKEEGTEAACKAAGKYRQ 573
S+ DN++R + R Y +R H R+ D + + +GTE YR
Sbjct: 347 SRYTDNNQRSDWRTEDRDYEVDVRREGKHRRNDDQRYVTRHQQRTDGTEEDVSLLESYRW 406
Query: 574 QGRNYVVEDGDIIFFKFNAGR 636
Y +D DI ++ +GR
Sbjct: 407 HDEEYDYDDRDIAERRYYSGR 427
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 418 LDNSERHKGSSSRRTYPHRLREGFHHGRSHDFKDFKEEGTE 540
L SE +K S+ T+PHRL G + G+S + EE +
Sbjct: 232 LHQSEVNKALSACNTHPHRLGTGGYVGKSFQWAREDEEAAQ 272
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +2
Query: 215 DRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFT 394
D+ RP LSS GV K T ++ + + +D+++ + +
Sbjct: 237 DKISRPALSSIPSRGVSPKKATMASTTNALA--RSIDLADKIDRLVSLSVSSPRTPTASN 294
Query: 395 AGADEVKAWTIQKGTKAPQAA 457
ADE K+ ++ KGTK A
Sbjct: 295 GAADESKSMSVSKGTKPAAVA 315
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = -3
Query: 430 LNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRDTFSRIHVQQFRFQHSRN 251
+ C F+ IC+ E I LQSL ++D C + F + +F +
Sbjct: 1 MECSSFEAICNESEMIAHLQSLFWSSSDADPCFGSSSFSLISSEGYDTMTTEFVNSSTNV 60
Query: 250 GIRGEPGSFLSIHSLSFGN 194
+ SF+S + GN
Sbjct: 61 CFDYQDDSFVSAEETTIGN 79
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 75 AIGAQXTIEVLNKYLFLTS---KPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPL 245
A+GA L + FL + + LY L E+ R K+ WLP L + PL
Sbjct: 16 AVGADMVAAALRQLEFLAAVDRRRWLYEGPLLERAIHRYKSCWLPLLSKHTQAAVVDGPL 75
Query: 246 IPFLEC-WNLNC 278
+ L+C W +C
Sbjct: 76 VVPLDCEWIWHC 87
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 677 EPCRVXSXWRP-SNRRPALNLKKMMSPSSTT*LRPCC 570
+PC WRP S RRPA+ + P++ L CC
Sbjct: 204 DPCSPSKAWRPCSRRRPAVAEPSRLGPAAVAPLL-CC 239
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 147 LVNLSEKDYIRKKNKWLPKLKEWIDKN 227
L+N +E K WL + KEW+D+N
Sbjct: 421 LINTAELLKKEKSTDWLREFKEWMDEN 447
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 443 APQAAGRIHTDFEKGFIMAEVMISRTSRKRVPKLRVKPPENTGN 574
+P A R+H D G + I R+ + K+ V+P +N N
Sbjct: 540 SPLVAHRVHVDPLSGLVFTNESILTICREGLIKIWVRPDQNENN 583
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 348 SLFKDIRLCNWSISSQLEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVSSWPKS*FQGLQ 524
SL IR+ WS+ S E M + QRL + ++ V+ W KS Q LQ
Sbjct: 473 SLSGAIRVNPWSVESMAEAMNAALRMPEPEQRLRHEKHYKYVSTHDVAYWAKSFDQDLQ 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,299
Number of Sequences: 37544
Number of extensions: 397518
Number of successful extensions: 1106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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