Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0474
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 34 0.14
SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 29 3.9
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4) 28 6.9
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 6.9
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 9.1
SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23) 28 9.1
SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15) 28 9.1
>SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +1
Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRRFEGRXK 657
+GF + DFKE G+EAACK+AGKYRQ+G+NYVV+DGDIIFFKFNAG + K
Sbjct: 18 KGFIMAEVMKYDDFKECGSEAACKSAGKYRQEGKNYVVQDGDIIFFKFNAGAGLSDKKK 76
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508
+ P +G+IHTDFEKGFIMAEVM
Sbjct: 4 QGPGCSGKIHTDFEKGFIMAEVM 26
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +3
Query: 273 NCWTWIRLNVSLT*RN------TA*RVHWTRSLFKDIRLCNWSISSQLEQMKSKPGQFRK 434
NCW + S R A R+ W F R C + S++L ++ G
Sbjct: 4 NCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQGNCG---- 59
Query: 435 AQRLLKPQDVSTPTSRRVSSWPK 503
A+ L P++ S+PT RR + WP+
Sbjct: 60 AETGLVPREKSSPTKRRETLWPE 82
>SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 28
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 195 LPKLKEWIDKNDPGSPLIPF 254
L K+KEW+D D G+ +IPF
Sbjct: 2 LVKIKEWVDSRDKGAAIIPF 21
>SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 475 VGVDTSCGLRSLCA--FLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRD 302
VGV +CG R CA L P +FI S + + Q++ + L + C +QV +
Sbjct: 235 VGVSPACGSRGQCATVLLENPRGEFILSRDQLLHQVKCVFGLGTGSLSCANRPSAIQVLE 294
Query: 301 TF 296
F
Sbjct: 295 LF 296
>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1761
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708
R+ EGR K MT++ + L+H +Y+N
Sbjct: 4 RKKEGRGKKMTKKATYHLLHQIYYN 28
>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
Length = 1344
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/101 (25%), Positives = 42/101 (41%)
Frame = -3
Query: 478 EVGVDTSCGLRSLCAFLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRDT 299
+VG+ TS G + ++ NC D + E LQ + LN +++ T Y F
Sbjct: 931 QVGLVTSGGTVHIWSYTNCIDMDQVLGGFPECLQADICLHLNANVL--TTYRAFTSASQG 988
Query: 298 FSRIHVQQFRFQHSRNGIRGEPGSFLSIHSLSFGNHLFFFL 176
R + R H PG F+ I+ +HL+F +
Sbjct: 989 CLRSLALKLRTTHL------PPGDFI-IYQGDEISHLYFLV 1022
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 229 SFLSIHSLSFGNHLFFFLM*SFSDKLTRYRAGFEVRNRYLFKTSXV---HCAPIAESNVF 59
SFL++ +S +L + K+T YR GF + +LF + + H P + VF
Sbjct: 301 SFLTLTLISVDRYLLVTSGIDYPTKVTNYRVGFVIALSWLFMIAIIITQHFIP-NRATVF 359
Query: 58 LLI 50
+LI
Sbjct: 360 ILI 362
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 284 MDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAW 421
+ P +R++ L+EH I L ++++ A+ L +F + VK+W
Sbjct: 262 LKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSW 307
>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 699 QHVH*KQRTLSRHXFXASFKPAPRVELEEDDVAILDDVITTLLPVFSGGFTRSFGTL 529
QH H +QR ++ F +F A R EEDDV + + + +LLP T S G +
Sbjct: 249 QHNH-QQREMAVSIFQ-TFLGASRASGEEDDVKLWEGLFGSLLPSLPCFATNSTGNV 303
>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
Length = 187
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 439 CAFLNCPGFDFICSSC 392
C LNCPG F CS+C
Sbjct: 141 CQDLNCPGCHFPCSAC 156
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/103 (25%), Positives = 42/103 (40%)
Frame = +3
Query: 183 KNKWLPKLKEWIDKNDPGSPLIPFLECWNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKD 362
+NKW+ +W+D+N S + W + W+ N R++ W
Sbjct: 418 RNKWVVIRNKWVDRN---SKWVDRNSRWVVRNSKWVVRNSKWVVRHS----KWV------ 464
Query: 363 IRLCNWSISSQLEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVS 491
+R W + + QM P A ++ PQ + TPTS R S
Sbjct: 465 VRNSKWVVRNSKWQMGGPP---HMAGQMPGPQPMGTPTSGRRS 504
>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1575
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708
R+ EGR K MT++ + L+ +Y+N
Sbjct: 1303 RKMEGRGKRMTKKATYHLLQQIYYN 1327
>SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23)
Length = 346
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708
R+ EGR K MT++ + L+ +Y+N
Sbjct: 34 RKMEGREKRMTKKATYHLLQQIYYN 58
>SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 197 TKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLK 316
T + + RQ+ PR S SIP + K + + T VS K
Sbjct: 127 TLIETIIRQRNPRPSRPSIPEITRQKWIQLHTTNLVSNTK 166
>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
Length = 742
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 197 TKAQRVDRQKRPRLSSDSIP-GVLESK 274
+K Q D +K PR SSDSIP G+L+ K
Sbjct: 90 SKDQPGDVRKTPRKSSDSIPHGILKDK 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,857
Number of Sequences: 59808
Number of extensions: 470409
Number of successful extensions: 1322
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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