BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0474 (738 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15 SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 34 0.14 SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56 SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56 SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3 SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 29 3.9 SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9 SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4) 28 6.9 SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 6.9 SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 9.1 SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23) 28 9.1 SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1 SB_544| Best HMM Match : PDZ (HMM E-Value=0.15) 28 9.1 >SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 78 Score = 80.6 bits (190), Expect = 1e-15 Identities = 36/59 (61%), Positives = 44/59 (74%) Frame = +1 Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRRFEGRXK 657 +GF + DFKE G+EAACK+AGKYRQ+G+NYVV+DGDIIFFKFNAG + K Sbjct: 18 KGFIMAEVMKYDDFKECGSEAACKSAGKYRQEGKNYVVQDGDIIFFKFNAGAGLSDKKK 76 Score = 41.5 bits (93), Expect = 7e-04 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = +2 Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508 + P +G+IHTDFEKGFIMAEVM Sbjct: 4 QGPGCSGKIHTDFEKGFIMAEVM 26 >SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) Length = 794 Score = 33.9 bits (74), Expect = 0.14 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Frame = +3 Query: 273 NCWTWIRLNVSLT*RN------TA*RVHWTRSLFKDIRLCNWSISSQLEQMKSKPGQFRK 434 NCW + S R A R+ W F R C + S++L ++ G Sbjct: 4 NCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQGNCG---- 59 Query: 435 AQRLLKPQDVSTPTSRRVSSWPK 503 A+ L P++ S+PT RR + WP+ Sbjct: 60 AETGLVPREKSSPTKRRETLWPE 82 >SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 28 Score = 31.9 bits (69), Expect = 0.56 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 195 LPKLKEWIDKNDPGSPLIPF 254 L K+KEW+D D G+ +IPF Sbjct: 2 LVKIKEWVDSRDKGAAIIPF 21 >SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 314 Score = 31.9 bits (69), Expect = 0.56 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -3 Query: 475 VGVDTSCGLRSLCA--FLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRD 302 VGV +CG R CA L P +FI S + + Q++ + L + C +QV + Sbjct: 235 VGVSPACGSRGQCATVLLENPRGEFILSRDQLLHQVKCVFGLGTGSLSCANRPSAIQVLE 294 Query: 301 TF 296 F Sbjct: 295 LF 296 >SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1761 Score = 29.9 bits (64), Expect = 2.3 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +1 Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708 R+ EGR K MT++ + L+H +Y+N Sbjct: 4 RKKEGRGKKMTKKATYHLLHQIYYN 28 >SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) Length = 1344 Score = 29.1 bits (62), Expect = 3.9 Identities = 26/101 (25%), Positives = 42/101 (41%) Frame = -3 Query: 478 EVGVDTSCGLRSLCAFLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRDT 299 +VG+ TS G + ++ NC D + E LQ + LN +++ T Y F Sbjct: 931 QVGLVTSGGTVHIWSYTNCIDMDQVLGGFPECLQADICLHLNANVL--TTYRAFTSASQG 988 Query: 298 FSRIHVQQFRFQHSRNGIRGEPGSFLSIHSLSFGNHLFFFL 176 R + R H PG F+ I+ +HL+F + Sbjct: 989 CLRSLALKLRTTHL------PPGDFI-IYQGDEISHLYFLV 1022 >SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 510 Score = 28.7 bits (61), Expect = 5.2 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 229 SFLSIHSLSFGNHLFFFLM*SFSDKLTRYRAGFEVRNRYLFKTSXV---HCAPIAESNVF 59 SFL++ +S +L + K+T YR GF + +LF + + H P + VF Sbjct: 301 SFLTLTLISVDRYLLVTSGIDYPTKVTNYRVGFVIALSWLFMIAIIITQHFIP-NRATVF 359 Query: 58 LLI 50 +LI Sbjct: 360 ILI 362 >SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 896 Score = 28.7 bits (61), Expect = 5.2 Identities = 13/46 (28%), Positives = 26/46 (56%) Frame = +2 Query: 284 MDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAW 421 + P +R++ L+EH I L ++++ A+ L +F + VK+W Sbjct: 262 LKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSW 307 >SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 467 Score = 28.3 bits (60), Expect = 6.9 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = -1 Query: 699 QHVH*KQRTLSRHXFXASFKPAPRVELEEDDVAILDDVITTLLPVFSGGFTRSFGTL 529 QH H +QR ++ F +F A R EEDDV + + + +LLP T S G + Sbjct: 249 QHNH-QQREMAVSIFQ-TFLGASRASGEEDDVKLWEGLFGSLLPSLPCFATNSTGNV 303 >SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4) Length = 187 Score = 28.3 bits (60), Expect = 6.9 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 Query: 439 CAFLNCPGFDFICSSC 392 C LNCPG F CS+C Sbjct: 141 CQDLNCPGCHFPCSAC 156 >SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) Length = 772 Score = 28.3 bits (60), Expect = 6.9 Identities = 26/103 (25%), Positives = 42/103 (40%) Frame = +3 Query: 183 KNKWLPKLKEWIDKNDPGSPLIPFLECWNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKD 362 +NKW+ +W+D+N S + W + W+ N R++ W Sbjct: 418 RNKWVVIRNKWVDRN---SKWVDRNSRWVVRNSKWVVRNSKWVVRHS----KWV------ 464 Query: 363 IRLCNWSISSQLEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVS 491 +R W + + QM P A ++ PQ + TPTS R S Sbjct: 465 VRNSKWVVRNSKWQMGGPP---HMAGQMPGPQPMGTPTSGRRS 504 >SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) Length = 1575 Score = 27.9 bits (59), Expect = 9.1 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708 R+ EGR K MT++ + L+ +Y+N Sbjct: 1303 RKMEGRGKRMTKKATYHLLQQIYYN 1327 >SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23) Length = 346 Score = 27.9 bits (59), Expect = 9.1 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708 R+ EGR K MT++ + L+ +Y+N Sbjct: 34 RKMEGREKRMTKKATYHLLQQIYYN 58 >SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 191 Score = 27.9 bits (59), Expect = 9.1 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 197 TKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLK 316 T + + RQ+ PR S SIP + K + + T VS K Sbjct: 127 TLIETIIRQRNPRPSRPSIPEITRQKWIQLHTTNLVSNTK 166 >SB_544| Best HMM Match : PDZ (HMM E-Value=0.15) Length = 742 Score = 27.9 bits (59), Expect = 9.1 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +2 Query: 197 TKAQRVDRQKRPRLSSDSIP-GVLESK 274 +K Q D +K PR SSDSIP G+L+ K Sbjct: 90 SKDQPGDVRKTPRKSSDSIPHGILKDK 116 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,625,857 Number of Sequences: 59808 Number of extensions: 470409 Number of successful extensions: 1322 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1322 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1986074805 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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