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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0474
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                34   0.14 
SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             29   3.9  
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             28   6.9  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             28   6.9  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   28   9.1  
SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23)                    28   9.1  
SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        28   9.1  

>SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/59 (61%), Positives = 44/59 (74%)
 Frame = +1

Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRRFEGRXK 657
           +GF       + DFKE G+EAACK+AGKYRQ+G+NYVV+DGDIIFFKFNAG     + K
Sbjct: 18  KGFIMAEVMKYDDFKECGSEAACKSAGKYRQEGKNYVVQDGDIIFFKFNAGAGLSDKKK 76



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508
           + P  +G+IHTDFEKGFIMAEVM
Sbjct: 4   QGPGCSGKIHTDFEKGFIMAEVM 26


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +3

Query: 273 NCWTWIRLNVSLT*RN------TA*RVHWTRSLFKDIRLCNWSISSQLEQMKSKPGQFRK 434
           NCW    +  S   R        A R+ W    F   R C  + S++L  ++   G    
Sbjct: 4   NCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQGNCG---- 59

Query: 435 AQRLLKPQDVSTPTSRRVSSWPK 503
           A+  L P++ S+PT RR + WP+
Sbjct: 60  AETGLVPREKSSPTKRRETLWPE 82


>SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 28

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 195 LPKLKEWIDKNDPGSPLIPF 254
           L K+KEW+D  D G+ +IPF
Sbjct: 2   LVKIKEWVDSRDKGAAIIPF 21


>SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 475 VGVDTSCGLRSLCA--FLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRD 302
           VGV  +CG R  CA   L  P  +FI S  + + Q++ +  L    + C      +QV +
Sbjct: 235 VGVSPACGSRGQCATVLLENPRGEFILSRDQLLHQVKCVFGLGTGSLSCANRPSAIQVLE 294

Query: 301 TF 296
            F
Sbjct: 295 LF 296


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708
           R+ EGR K MT++ +  L+H +Y+N
Sbjct: 4   RKKEGRGKKMTKKATYHLLHQIYYN 28


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/101 (25%), Positives = 42/101 (41%)
 Frame = -3

Query: 478  EVGVDTSCGLRSLCAFLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRDT 299
            +VG+ TS G   + ++ NC   D +     E LQ    + LN +++  T Y  F      
Sbjct: 931  QVGLVTSGGTVHIWSYTNCIDMDQVLGGFPECLQADICLHLNANVL--TTYRAFTSASQG 988

Query: 298  FSRIHVQQFRFQHSRNGIRGEPGSFLSIHSLSFGNHLFFFL 176
              R    + R  H        PG F+ I+     +HL+F +
Sbjct: 989  CLRSLALKLRTTHL------PPGDFI-IYQGDEISHLYFLV 1022


>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 229 SFLSIHSLSFGNHLFFFLM*SFSDKLTRYRAGFEVRNRYLFKTSXV---HCAPIAESNVF 59
           SFL++  +S   +L       +  K+T YR GF +   +LF  + +   H  P   + VF
Sbjct: 301 SFLTLTLISVDRYLLVTSGIDYPTKVTNYRVGFVIALSWLFMIAIIITQHFIP-NRATVF 359

Query: 58  LLI 50
           +LI
Sbjct: 360 ILI 362


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 284 MDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAW 421
           + P +R++ L+EH I   L ++++    A+ L +F  +    VK+W
Sbjct: 262 LKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSW 307


>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -1

Query: 699 QHVH*KQRTLSRHXFXASFKPAPRVELEEDDVAILDDVITTLLPVFSGGFTRSFGTL 529
           QH H +QR ++   F  +F  A R   EEDDV + + +  +LLP      T S G +
Sbjct: 249 QHNH-QQREMAVSIFQ-TFLGASRASGEEDDVKLWEGLFGSLLPSLPCFATNSTGNV 303


>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 439 CAFLNCPGFDFICSSC 392
           C  LNCPG  F CS+C
Sbjct: 141 CQDLNCPGCHFPCSAC 156


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 26/103 (25%), Positives = 42/103 (40%)
 Frame = +3

Query: 183 KNKWLPKLKEWIDKNDPGSPLIPFLECWNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKD 362
           +NKW+    +W+D+N   S  +     W +    W+  N     R++     W       
Sbjct: 418 RNKWVVIRNKWVDRN---SKWVDRNSRWVVRNSKWVVRNSKWVVRHS----KWV------ 464

Query: 363 IRLCNWSISSQLEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVS 491
           +R   W + +   QM   P     A ++  PQ + TPTS R S
Sbjct: 465 VRNSKWVVRNSKWQMGGPP---HMAGQMPGPQPMGTPTSGRRS 504


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 634  RRFEGRXKXMTRQGSLLLVHMLYFN 708
            R+ EGR K MT++ +  L+  +Y+N
Sbjct: 1303 RKMEGRGKRMTKKATYHLLQQIYYN 1327


>SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23)
          Length = 346

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 634 RRFEGRXKXMTRQGSLLLVHMLYFN 708
           R+ EGR K MT++ +  L+  +Y+N
Sbjct: 34  RKMEGREKRMTKKATYHLLQQIYYN 58


>SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 197 TKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLK 316
           T  + + RQ+ PR S  SIP +   K + +  T  VS  K
Sbjct: 127 TLIETIIRQRNPRPSRPSIPEITRQKWIQLHTTNLVSNTK 166


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 197 TKAQRVDRQKRPRLSSDSIP-GVLESK 274
           +K Q  D +K PR SSDSIP G+L+ K
Sbjct: 90  SKDQPGDVRKTPRKSSDSIPHGILKDK 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,857
Number of Sequences: 59808
Number of extensions: 470409
Number of successful extensions: 1322
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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