Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0474
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...   136   2e-32
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    30   2.0  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    30   2.0  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    30   2.0  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    30   2.0  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   4.5  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   4.5  
U39850-9|AAM45371.1|  440|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-8|AAM45369.1|  558|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-7|AAM45370.1|  573|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-5|AAM45368.1|  670|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-4|ABB51184.1|  672|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.9  

>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score =  136 bits (329), Expect = 2e-32
 Identities = 65/84 (77%), Positives = 69/84 (82%)
 Frame = +2

Query: 257 GVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKG 436
           G  E KLLDM   ER  YLKE G+TS LDKI+  GYKALQLEYFFT+G DEVKAWTIQ G
Sbjct: 262 GAFELKLLDMPEDERQKYLKEQGVTSNLDKIVHTGYKALQLEYFFTSGEDEVKAWTIQVG 321

Query: 437 TKAPQAAGRIHTDFEKGFIMAEVM 508
           T AP+AAGRIHTDFEKGFIMAEVM
Sbjct: 322 TPAPKAAGRIHTDFEKGFIMAEVM 345



 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 43/59 (72%), Positives = 50/59 (84%)
 Frame = +3

Query: 96  IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIPFLECWNL 272
           IE+LNK+LFLT+KP +YLVNLSEKDYIRKKNKWLPK+K WID ND G+ LIPF   + L
Sbjct: 208 IEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKWLPKIKAWIDTNDAGAVLIPFSGAFEL 266



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +1

Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGRRFEGRXK 657
           +GF         D  E G EA CKA GKYRQQG+ Y+V+DGD+IFFKFNAG   + + K
Sbjct: 337 KGFIMAEVMKVADLIELGDEAKCKAGGKYRQQGKTYIVQDGDVIFFKFNAGAGLQAKKK 395


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 368 PYILEQ*SCPMHSLCRVPSSKRHVQSDPCPAI*IPTLQEWNQRRAGVV 225
           P+ILE    P+HS C +PSS   + + P P I    ++++ QR  G++
Sbjct: 396 PFILENADDPLHSRCILPSSCPEIPT-PAPEI----VEQFVQRNPGMI 438


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 368 PYILEQ*SCPMHSLCRVPSSKRHVQSDPCPAI*IPTLQEWNQRRAGVV 225
           P+ILE    P+HS C +PSS   + + P P I    ++++ QR  G++
Sbjct: 187 PFILENADDPLHSRCILPSSCPEIPT-PAPEI----VEQFVQRNPGMI 229


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 313 QVRDTFSRIHVQQFRFQHSRNGIRGEPGSFLS-IHSLS 203
           ++R+   R HV Q+  Q  +NG  GE G FLS + S+S
Sbjct: 133 ELREILLRKHVHQYE-QAKKNGAGGEKGGFLSTVRSIS 169


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 313 QVRDTFSRIHVQQFRFQHSRNGIRGEPGSFLS-IHSLS 203
           ++R+   R HV Q+  Q  +NG  GE G FLS + S+S
Sbjct: 175 ELREILLRKHVHQYE-QAKKNGAGGEKGGFLSTVRSIS 211


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 313 QVRDTFSRIHVQQFRFQHSRNGIRGEPGSFLS-IHSLS 203
           ++R+   R HV Q+  Q  +NG  GE G FLS + S+S
Sbjct: 133 ELREILLRKHVHQYE-QAKKNGAGGEKGGFLSTVRSIS 169


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 313 QVRDTFSRIHVQQFRFQHSRNGIRGEPGSFLS-IHSLS 203
           ++R+   R HV Q+  Q  +NG  GE G FLS + S+S
Sbjct: 133 ELREILLRKHVHQYE-QAKKNGAGGEKGGFLSTVRSIS 169


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 391 HSWSR*SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHD 510
           H  S      D+   H G++    + H      HHG SHD
Sbjct: 384 HGHSHDHNEHDHGHSHGGNNDNHGHSHSAGSDNHHGHSHD 423


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 391 HSWSR*SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHD 510
           H  S      D+   H G++    + H      HHG SHD
Sbjct: 402 HGHSHDHNEHDHGHSHGGNNDNHGHSHSAGSDNHHGHSHD 441


>U39850-9|AAM45371.1|  440|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform f
           protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
           L+  L+  K TT E  TN Y   + GSTK
Sbjct: 127 LHPLLLQFKLTTSELETNAYPMRRDGSTK 155


>U39850-8|AAM45369.1|  558|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform d
           protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
           L+  L+  K TT E  TN Y   + GSTK
Sbjct: 245 LHPLLLQFKLTTSELETNAYPMRRDGSTK 273


>U39850-7|AAM45370.1|  573|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform e
           protein.
          Length = 573

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
           L+  L+  K TT E  TN Y   + GSTK
Sbjct: 260 LHPLLLQFKLTTSELETNAYPMRRDGSTK 288


>U39850-5|AAM45368.1|  670|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform c
           protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
           L+  L+  K TT E  TN Y   + GSTK
Sbjct: 357 LHPLLLQFKLTTSELETNAYPMRRDGSTK 385


>U39850-4|ABB51184.1|  672|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform g
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
           L+  L+  K TT E  TN Y   + GSTK
Sbjct: 359 LHPLLLQFKLTTSELETNAYPMRRDGSTK 387


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 139  LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 225
            L+  L+  K TT E  TN Y   + GSTK
Sbjct: 1334 LHPLLLQFKLTTSELETNAYPMRRDGSTK 1362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,516
Number of Sequences: 27780
Number of extensions: 341985
Number of successful extensions: 1061
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)