Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0474
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.74 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   6.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 147 LVNLSEKDYIRKKNKWL 197
           L+N++EK+ I K N WL
Sbjct: 63  LINVNEKNQIMKSNVWL 79


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 54  RRNTLDSAIGAQXTIEVLNKYLFLTSKPALYL 149
           R++T ++ + A    +++   +F+TS+P  +L
Sbjct: 50  RQDTKNNLLNAYVRFKLVTDCIFVTSEPGYFL 81


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 178 EKRTNGYQSSKSGSTKTTPALL*FH 252
           EKR+  +Q  +SGS     A + FH
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFH 260


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 178 EKRTNGYQSSKSGSTKTTPALL*FH 252
           EKR+  +Q  +SGS     A + FH
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFH 260


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 94  VHCAPIAESNVFLLIN 47
           V C+PI+++NV + I+
Sbjct: 102 VECSPISDANVHIKIS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,068
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)