Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0474
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30580.1 68414.m03741 expressed protein                            110   8e-25
At1g56050.1 68414.m06436 GTP-binding protein-related similar to ...    80   1e-15
At3g21400.1 68416.m02701 expressed protein                             31   0.60 
At4g00460.1 68417.m00063 expressed protein contains Pfam profile...    30   1.4  
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    29   4.3  
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei...    28   7.4  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    27   9.8  
At3g08500.1 68416.m00985 myb family transcription factor (MYB83)...    27   9.8  
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    27   9.8  
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf...    27   9.8  
At1g35890.1 68414.m04458 hypothetical protein                          27   9.8  

>At1g30580.1 68414.m03741 expressed protein
          Length = 394

 Score =  110 bits (265), Expect = 8e-25
 Identities = 70/169 (41%), Positives = 89/169 (52%)
 Frame = +2

Query: 2   LKPEYDSLAKVKTILVDEKKHIRFGDWSAVXX*SFK*IPVPNFKTRSIPR*FI*KGLH*K 181
           LK E + L KVK  L D K  +RFGDW            + + K          +    K
Sbjct: 181 LKIELELLQKVKAWLEDGKD-VRFGDWKTADIEILNTFQLLSAKPVVYLINLNERDYQRK 239

Query: 182 KEQMVTKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQG 361
           K + + K      Q+    +     GV E  L DM P E   Y +E+ + SAL +II  G
Sbjct: 240 KNKFLPKIHAWV-QEHGGDTMIPFSGVFERSLADMAPDEAAKYCEENKLQSALPRIIKTG 298

Query: 362 YKALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVM 508
           + A+ L YFFTAG DEVK W I++ +KAPQAAG IHTDFE+GFI AEVM
Sbjct: 299 FSAINLIYFFTAGPDEVKCWQIRRQSKAPQAAGAIHTDFERGFICAEVM 347



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 31/48 (64%), Positives = 35/48 (72%)
 Frame = +1

Query: 484 GFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFN 627
           GF       F+D KE G E A KAAGKYRQ+G+ YVV+DGDIIFFKFN
Sbjct: 340 GFICAEVMKFEDLKELGNEPAVKAAGKYRQEGKTYVVQDGDIIFFKFN 387



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/53 (50%), Positives = 41/53 (77%)
 Frame = +3

Query: 96  IEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIPF 254
           IE+LN +  L++KP +YL+NL+E+DY RKKNK+LPK+  W+ ++  G  +IPF
Sbjct: 211 IEILNTFQLLSAKPVVYLINLNERDYQRKKNKFLPKIHAWVQEHG-GDTMIPF 262


>At1g56050.1 68414.m06436 GTP-binding protein-related similar to
           GTP-binding protein GI:10176676 from [Bacillus
           halodurans]
          Length = 421

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 LESKLLDMDPTERVSYLKEHGIT-SALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGT 439
           +ES+L ++   ER  YL   G++ S L  +I   Y  L L+ +FT+G  E +AWTI  G 
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357

Query: 440 KAPQAAGRIHTDFEKGFIMAEVM 508
            APQAAG IH+DFEKGFI AE +
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETV 380



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 31/49 (63%)
 Frame = +1

Query: 481 EGFHHGRSHDFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFN 627
           +GF    +  ++DF   G+ AA +  G  R +G+ Y+V++GD++ F+FN
Sbjct: 372 KGFIRAETVAYEDFVTAGSIAAAREKGLLRSEGKEYIVKEGDVMLFRFN 420


>At3g21400.1 68416.m02701 expressed protein 
          Length = 188

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 26/93 (27%), Positives = 43/93 (46%)
 Frame = +2

Query: 290 PTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIH 469
           PTE +S +K    T+A+D +  +G +        T+  + ++    +  T   Q  GRI 
Sbjct: 31  PTEELSAVKSSPSTAAVDGVSDKGRR--------TSEDNVLEERDPKYDTMLNQMVGRIK 82

Query: 470 TDFEKGFIMAEVMISRTSRKRVPKLRVKPPENT 568
                   M E  +  TS++ +PKLR   PE+T
Sbjct: 83  AKPGGKAEMGEASVVETSKRPLPKLRNTTPEST 115


>At4g00460.1 68417.m00063 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 473

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = +3

Query: 216 IDKNDPGSPLIPFLECWNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKDIRLCNWSISSQ 395
           ID+ND  +   P     +++ + + R   S T    + ++  T S   +   CNW + ++
Sbjct: 19  IDQNDQSAVETPVYSTMSIDSFVYPR-TCSETTSGFSDQIDETNSFCSEASPCNWPVLTE 77

Query: 396 LEQMKSKPGQFRKAQRLLKPQDVSTP 473
            +  K   G   ++   L  Q++S P
Sbjct: 78  SKSSKCLSGLEMQSNECLVVQEISEP 103


>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 347 SCPMHSLCRVPSSKRHVQSDPCPAI*IP 264
           +CP+  L  +PS  R  Q DP P++  P
Sbjct: 137 TCPLCRLALIPSRSRQSQDDPVPSLVSP 164


>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
           contains Pfam profiles: PF02538 hydantoinase
           B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
           PF05378 hydantoinase/oxoprolinase N-terminal region
          Length = 1266

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 585 ITTLLPVFSGGFTRSFGTLFLEVLEI--MTSAMMKPFSKSVWIRPAA*GAF 439
           IT + PVF  G    F        E+  +T   M PFSK++W   AA  AF
Sbjct: 834 ITVITPVFDKGKLVFFVASRGHHAEVGGITPGSMPPFSKAIWEEGAAIKAF 884


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 409 SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHDFKDFKEEG 534
           S +  NS+R++ SSS   YP    EG HHG   +++   + G
Sbjct: 207 SGNFRNSQRNRNSSS---YPRG--EGLHHGNRRNYEHGNQSG 243


>At3g08500.1 68416.m00985 myb family transcription factor (MYB83)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 343

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 198 PKLKEWIDKNDPGSPLIPFLECWNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKDIRLCN 377
           PKL++ +   D    LI ++      CW+ I  N  L     + R+ W   L  D++  +
Sbjct: 28  PKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGS 87

Query: 378 WS 383
           +S
Sbjct: 88  FS 89


>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 164 KGLH*KKEQMVTKAQRVDRQKRPRLSSDSIPGVLESKLLDMDPTERVSYLKEHGITS 334
           K LH K+    T  Q  +        +  I   LE ++LD     RVS L E+G+TS
Sbjct: 117 KFLHVKENSNCTSQQLAENSMA---GNGGIRSDLERRILDSREGVRVSQLSENGVTS 170


>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]; similar to rab11 binding protein GI:4512103
           from [Bos taurus]
          Length = 593

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 380 EYFFTAGADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMIS-RTSR 526
           EYF + G   V AWT Q  TK  + AG    D E   +M ++  S R SR
Sbjct: 488 EYFHSPGVSAVAAWT-QPETKVSKVAG---DDEESRRVMRKIQSSGRLSR 533


>At1g35890.1 68414.m04458 hypothetical protein
          Length = 171

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 339 WTRSLFKDIRLCNWSISSQLEQMKSKPGQFRKAQRLLKPQDVSTPTSRR 485
           WTR     +R+  W I    +  K K     +A    KPQ +    S++
Sbjct: 64  WTRRKKISLRIVVWKIQKYKKSKKDKKDHQHEASSSSKPQPIKKKKSKK 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,202
Number of Sequences: 28952
Number of extensions: 323064
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)