BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0473 (646 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.3 SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.3 SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.1 SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 7.1 SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.3 >SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 27.1 bits (57), Expect = 2.3 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 Query: 374 PGLNLRTLSTFGHHRNRLCMVKLTGY 297 P ++L + FG N +CM +L GY Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259 >SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 27.1 bits (57), Expect = 2.3 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 404 EESIAKAVRYSNVVINLVGRDYETKNFKYND 496 +ESI+ + SN+ ++L R Y+TK K+N+ Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195 >SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 25.4 bits (53), Expect = 7.1 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 96 TSKLLHLNGSMSVVYIKAAN-YSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTDLSDA 269 + K LH+ + + N YSS R A+ GT SFN ++++ G +++ A Sbjct: 242 SEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSFN--ISSLSGSSNIGTA 298 >SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 25.4 bits (53), Expect = 7.1 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = -1 Query: 646 PNTCLFXXQTVSSGQEVSDVLQHLNKTD 563 PN C+F V G +D+L H ++ + Sbjct: 421 PNPCMFSINDVVFGVSTNDILLHTSREE 448 >SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 359 Score = 25.0 bits (52), Expect = 9.3 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +2 Query: 365 LGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 472 L + +P HL+ EE A +Y N + ++ +YE Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,499,006 Number of Sequences: 5004 Number of extensions: 48474 Number of successful extensions: 103 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 289756512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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