Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0473
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.3  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   7.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   7.1  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.3  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 374 PGLNLRTLSTFGHHRNRLCMVKLTGY 297
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 404 EESIAKAVRYSNVVINLVGRDYETKNFKYND 496
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 96  TSKLLHLNGSMSVVYIKAAN-YSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTDLSDA 269
           + K LH+   + +      N YSS R    A+   GT    SFN  ++++ G +++  A
Sbjct: 242 SEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSFN--ISSLSGSSNIGTA 298


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 646 PNTCLFXXQTVSSGQEVSDVLQHLNKTD 563
           PN C+F    V  G   +D+L H ++ +
Sbjct: 421 PNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 365 LGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 472
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,006
Number of Sequences: 5004
Number of extensions: 48474
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)