Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0473
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    70   1e-12
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779...    30   1.8  
11_06_0754 - 26935647-26937780,26940890-26941827                       29   3.2  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/77 (41%), Positives = 55/77 (71%)
 Frame = +2

Query: 293 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 472
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 473 TKNFKYNDVHVDV*EEL 523
           T+N+ +++V+  + E+L
Sbjct: 61  TRNYGFDEVNHHMAEQL 77


>03_05_0714 -
           27076881-27077218,27077332-27077482,27077768-27077903,
           27078309-27078457,27079141-27079267,27080033-27080172,
           27080264-27080329,27080760-27080901,27081021-27081115,
           27081640-27082140
          Length = 614

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 177 NLAAYKRGTGGRSSFNGIVATVFGCTDLSDAMCATNWEKLVPS*FYHTEAIS 332
           NLA +K      +S NG++ATV     L D  C T   +L+ + F    ++S
Sbjct: 277 NLACHKSLANAITSHNGLIATVVDQLFLDDPGCLTETFRLLSTIFQSNASMS 328


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 541 EGVERFIHLSYLNAEEHPKPLVL 609
           EG+++ + LSY N  EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,287
Number of Sequences: 37544
Number of extensions: 299544
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)