BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0473 (646 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27 SB_32398| Best HMM Match : PspC (HMM E-Value=1.4) 29 4.3 SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002) 29 4.3 SB_7318| Best HMM Match : YTV (HMM E-Value=4.2) 29 4.3 >SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 329 Score = 120 bits (288), Expect = 1e-27 Identities = 51/94 (54%), Positives = 75/94 (79%) Frame = +2 Query: 260 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 439 +GRYV N+LG++GTQL +PYRGD +D + L++ GDLGQ+ F +HL DEESIAK V++SN Sbjct: 32 LGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLGQIDFFDFHLKDEESIAKMVKHSN 91 Query: 440 VVINLVGRDYETKNFKYNDVHVDV*EELPESAEK 541 VV+NL+GR +ET+NF + +VHVD + ++A++ Sbjct: 92 VVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKE 125 Score = 41.1 bits (92), Expect = 7e-04 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = +3 Query: 192 KRGTGGRSSFNGIVATVFGCT 254 K+GTGGRSSFNG+ ATVFG T Sbjct: 9 KKGTGGRSSFNGVSATVFGAT 29 >SB_32398| Best HMM Match : PspC (HMM E-Value=1.4) Length = 203 Score = 28.7 bits (61), Expect = 4.3 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -3 Query: 257 IGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 120 +G ++ D V+ ++I C FT+ V GFD++ T P Sbjct: 58 LGTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 103 >SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002) Length = 512 Score = 28.7 bits (61), Expect = 4.3 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -3 Query: 257 IGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 120 +G ++ D V+ ++I C FT+ V GFD++ T P Sbjct: 292 LGTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 337 >SB_7318| Best HMM Match : YTV (HMM E-Value=4.2) Length = 127 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 278 CTHSVRQIGATENCGYDAVKATAATST 198 C + R GAT+ GY+ +AT AT T Sbjct: 99 CYNVTRATGATKTKGYNVTRATVATKT 125 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,419,348 Number of Sequences: 59808 Number of extensions: 357696 Number of successful extensions: 615 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 615 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1633044375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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