Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0473
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)                      29   4.3  
SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)               29   4.3  
SB_7318| Best HMM Match : YTV (HMM E-Value=4.2)                        29   4.3  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  120 bits (288), Expect = 1e-27
 Identities = 51/94 (54%), Positives = 75/94 (79%)
 Frame = +2

Query: 260 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 439
           +GRYV N+LG++GTQL +PYRGD +D + L++ GDLGQ+ F  +HL DEESIAK V++SN
Sbjct: 32  LGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLGQIDFFDFHLKDEESIAKMVKHSN 91

Query: 440 VVINLVGRDYETKNFKYNDVHVDV*EELPESAEK 541
           VV+NL+GR +ET+NF + +VHVD    + ++A++
Sbjct: 92  VVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKE 125



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +3

Query: 192 KRGTGGRSSFNGIVATVFGCT 254
           K+GTGGRSSFNG+ ATVFG T
Sbjct: 9   KKGTGGRSSFNGVSATVFGAT 29


>SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 257 IGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 120
           +G  ++   D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 58  LGTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 103


>SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)
          Length = 512

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 257 IGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 120
           +G  ++   D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 292 LGTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 337


>SB_7318| Best HMM Match : YTV (HMM E-Value=4.2)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 278 CTHSVRQIGATENCGYDAVKATAATST 198
           C +  R  GAT+  GY+  +AT AT T
Sbjct: 99  CYNVTRATGATKTKGYNVTRATVATKT 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,348
Number of Sequences: 59808
Number of extensions: 357696
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)