BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0473 (646 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical ... 91 5e-19 Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.1 Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 29 2.8 Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 29 2.8 AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a prot... 28 4.9 >AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical protein Y53G8AL.2 protein. Length = 431 Score = 91.5 bits (217), Expect = 5e-19 Identities = 44/81 (54%), Positives = 57/81 (70%) Frame = +2 Query: 260 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 439 +G V NK K G+Q+I+PYR D Y + KV G+LGQVL+ P+ L+DEESI KAV+YSN Sbjct: 71 LGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSN 130 Query: 440 VVINLVGRDYETKNFKYNDVH 502 VVINL+G T + Y DV+ Sbjct: 131 VVINLIGTRVPTGKYNYYDVN 151 Score = 35.9 bits (79), Expect = 0.025 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +3 Query: 90 QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCT 254 QA S + N S +V + A+ A +++G GGR+SF+G V TVFG + Sbjct: 14 QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGAS 68 >Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical protein F29G6.1 protein. Length = 1170 Score = 29.5 bits (63), Expect = 2.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 244 SVAPICRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 381 S +C + I + Y VN T+Q + CP VES +P PV Sbjct: 656 STKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701 >Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical protein F02E9.4b protein. Length = 1507 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 440 VVINLVGRDYETKNFKYNDVHVDV*EELPESAEKKELRD 556 +++ L+G + E KN ND+ + ++LP K+ LRD Sbjct: 745 IILQLLGAEKEPKNRPENDMDAVMRKDLPAIQPKRGLRD 783 >Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein F02E9.4a protein. Length = 1505 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 440 VVINLVGRDYETKNFKYNDVHVDV*EELPESAEKKELRD 556 +++ L+G + E KN ND+ + ++LP K+ LRD Sbjct: 745 IILQLLGAEKEPKNRPENDMDAVMRKDLPAIQPKRGLRD 783 >AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a protein protein 37 protein. Length = 302 Score = 28.3 bits (60), Expect = 4.9 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 194 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 108 L C KV ++RT V + H+TH +Q++ Sbjct: 29 LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,821,010 Number of Sequences: 27780 Number of extensions: 274517 Number of successful extensions: 576 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 576 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1423653030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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