Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0473
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             85   4e-17
At1g19540.1 68414.m02434 isoflavone reductase, putative similar ...    29   3.5  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    28   4.6  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      27   8.1  
At2g25760.2 68415.m03092 protein kinase family protein contains ...    27   8.1  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 38/88 (43%), Positives = 61/88 (69%)
 Frame = +2

Query: 260 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 439
           +GRY+  +L K+G+Q+++P+RG     + LK+ GDLGQV+   +   DE+SI   +  +N
Sbjct: 80  LGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKAVMAKAN 139

Query: 440 VVINLVGRDYETKNFKYNDVHVDV*EEL 523
           VVINL+GR+YET+NF + D +  + E+L
Sbjct: 140 VVINLIGREYETRNFSFEDANHHIAEKL 167



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +3

Query: 111 HLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCT 254
           HLNG+ +  Y  +++ ++    +LA  ++GTGGRSS +GIVATVFG T
Sbjct: 34  HLNGTDNCRY--SSSLATKGVGHLA--RKGTGGRSSVSGIVATVFGAT 77


>At1g19540.1 68414.m02434 isoflavone reductase, putative similar to
           SP|P52577; contains isoflavone reductase domain PF02716
          Length = 310

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 338 AQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGR 463
           AQ ++   DLG  +     L D+ES+ KA++  +VVI+ VGR
Sbjct: 44  AQLVERFKDLGVTILYG-SLSDKESLVKAIKQVDVVISAVGR 84


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 231 RCR*SYCGHQYLAYMLQGWVYDPNCS*RL 145
           RCR  +C     A    GWVY  +CS +L
Sbjct: 272 RCREPWCDGALSALESNGWVYSSHCSFKL 300


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 159 SSDRKPNLA--AYKRGTGGRSSFNGIVATVFGCTDLSDAMCATNWEKLVP 302
           S  R+P L   A    +G + SF+ +V  VFG   ++ A+ + +   LVP
Sbjct: 614 SGHRQPGLVDEALTEMSGSQLSFSSVVDGVFGLQKVTSALMSIDGHGLVP 663


>At2g25760.2 68415.m03092 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 676

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 260 QIGATENCGYDAVKATAATSTSLICC 183
           Q+G T+N G+   K   ATS   +CC
Sbjct: 330 QVGDTKNKGFLVCKKKMATSPETLCC 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,570
Number of Sequences: 28952
Number of extensions: 251763
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)