Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0471
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 57 3e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 31 0.13
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 29 0.89
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 27 2.1
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 27 2.1
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.1
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 27 3.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 27 3.6
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 4.7
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 6.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 8.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 8.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.3
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 8.3
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 8.3
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/66 (39%), Positives = 47/66 (71%)
Frame = +1
Query: 1 AQCAIDYILERTDVDTSRIILFGRSLGGAVAIDLASRLEYRNKIWALVVENTFTSIPDMA 180
+Q A++Y++E ++I+++G+S+GGAVAI L ++ +++I AL++ENTFTSI DM
Sbjct: 144 SQTALEYLMEHPICSKTKIVVYGQSIGGAVAIALTAK--NQDRISALILENTFTSIKDMI 201
Query: 181 QIILKW 198
+ +
Sbjct: 202 PTVFPY 207
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 276 PTLVICGSNDALVPPSMARELYTRCGSICKQMVVIPGGGHDDTWTCREYYPSMQQFL--- 446
P L + G D +VPP L+ CGS K+ P H+DT Y+ + FL
Sbjct: 233 PVLFLSGEKDEIVPPPQMVLLFGLCGSAKKKFHSFPKCTHNDTCLGDGYFQVIADFLAEN 292
Query: 447 -VNVPA 461
+N PA
Sbjct: 293 DINTPA 298
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 267 VISPTLVICGSNDALVPPSMARELYTRCGSICKQ---MVVIPGGGHDDTWTCREYYPSMQ 437
VIS V+C N+ ++++EL + + ++++PGG D EY S +
Sbjct: 84 VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYE 143
Query: 438 QFLVNVPAL 464
+ + VPAL
Sbjct: 144 EIIKEVPAL 152
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 273 SPTLVICGSNDALVPPSMARELYTRC 350
+P+L I G++D LVP + +++L RC
Sbjct: 166 TPSLHIAGTSDTLVPLARSKQLVERC 191
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 10 AIDYILERTDVDTSRIILFGRSLGGAVAIDLASRLEYRNKIWALVVE 150
A+ Y+ ++D +IIL G SLGGA+ A + N +V++
Sbjct: 133 AVSYVQRMFELD-EKIILVGHSLGGAICAYCAFQKTIPNTSGLVVID 178
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 471 EIGPFFEKNNESADLALYSLFNDSINKYL 557
++GP+ NN++ DL Y+L + N+ L
Sbjct: 367 DVGPYVSMNNKNGDLTEYTLRHPETNEQL 395
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 564 KYVNIY*SNH*TVSTTPSRQTHYFFQKMVQSHLVVLE 454
+++ + S + T SR+ HY MV+S L +LE
Sbjct: 118 RFIYLAASRETLIKRTTSRKNHYMKADMVESQLAILE 154
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 562 VRKYLLIESLNSEYNAKSADSLFFS 488
V KYLL+ + + YN D+ FFS
Sbjct: 303 VSKYLLVSAFLASYNPSRLDAQFFS 327
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 10 AIDYILERTDVDTSRIILFGRSLGGAVAIDLASRLEYRNKIWALVVENTFTSIPDMAQII 189
A+D + ER + + +F S + D S Y +IW + N +P Q++
Sbjct: 229 AVDSLRERFVDNNNSDYIFNVSYHKKIPADGFSL--YTREIWDTIENNKDLDLPTQQQLL 286
Query: 190 LKWRC 204
++RC
Sbjct: 287 AQYRC 291
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 429 SMQQFLVNVPALPS 470
SM Q+LVN+PA+PS
Sbjct: 72 SMDQYLVNMPAVPS 85
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 456 PALPSEIGPFFEKNNESADLALYSLFNDSINKYL 557
P+ E+GPF E+ D+ F +S+ K++
Sbjct: 43 PSNLDEVGPFLERLFTDGDIIPLGYFQNSLGKFI 76
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 133 WALVVENTFTSIPDMAQIILKWRCLNWLPQFCHKNKYMSLKKLHMSFHLH 282
W + T++ A+I+L+ R + LP+ + Y S +M++ H
Sbjct: 609 WIIAGTVLSTTVVAAAEILLRQRGIRTLPETVRNHFYRSTMFFYMTYVFH 658
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 477 QSHLVVLER*LKIVALKDSIPYTSRCH 397
+SHL+V E LKI+AL + +T H
Sbjct: 788 KSHLLVSEETLKIIALMSGVHHTRFKH 814
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 249 FEKIAHVISPTLVICGSNDALVPPSMARELYTRCGSICKQ 368
+EK +++ + L S DAL PS+ L ++C+Q
Sbjct: 217 YEKFSYLFTHLLSAIKSRDALSIPSLVLSLQEELFNLCQQ 256
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 456 PALPSEIGPFFEKNNESADLALYSLFND 539
P LPS + + ++ +LYSL+ND
Sbjct: 174 PPLPSSVSSHSSPYSTTSSTSLYSLYND 201
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 72 SSKQNNPTSINISS 31
SS+QNNP+S+N SS
Sbjct: 156 SSQQNNPSSLNTSS 169
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 432 MQQFLVNVPALPSEIGPFFE 491
MQ+F + VPA + IGP F+
Sbjct: 1 MQKFQIKVPASSANIGPGFD 20
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 267 VISPTLVICGSNDALVPPSMARELYTRCGSICKQMVVIPGGGHDDTWTCREYYPS 431
+ P L+ G + ++ S+ R L G + VI H DTW + YYPS
Sbjct: 194 IFHPRLITLGGDHSIGLASL-RAL----GHFYGNVSVIHFDSHLDTWNPKRYYPS 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,530
Number of Sequences: 5004
Number of extensions: 75177
Number of successful extensions: 186
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -