Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0471
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.96 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 414 REYYPSMQQFLVNVPA 461
           REYYPS++  ++ VPA
Sbjct: 193 REYYPSVEWDILGVPA 208


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 426 PSMQQFLVNVPALPSEIGPFFEKNNESADLAL 521
           P+M   +  +P +PS  GP   + ++ + L+L
Sbjct: 433 PNMPGSMPTMPTMPSMAGPIRRRISDKSALSL 464


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 405 WTCREYYPSMQQFLVNVPALPSEI 476
           WTCR+  P ++     +P LP+ I
Sbjct: 487 WTCRQPEPLIELIEHWMPLLPNWI 510


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 511 SADSLFFSKNGPISLGS 461
           S+ S FFS   P SLGS
Sbjct: 94  SSPSSFFSSVSPTSLGS 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,542
Number of Sequences: 438
Number of extensions: 5359
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)