Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0470
(858 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 148 2e-34
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 138 2e-31
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 111 2e-23
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 108 2e-22
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 101 3e-20
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 101 3e-20
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 99 7e-20
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 99 7e-20
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 100 9e-20
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 100 9e-20
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 99 1e-19
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 99 2e-19
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 98 2e-19
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 97 4e-19
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 95 2e-18
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 93 8e-18
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 91 2e-17
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 83 1e-14
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 80 8e-14
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 72 2e-11
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 62 2e-08
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 61 4e-08
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 57 7e-07
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 57 7e-07
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 57 7e-07
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 56 9e-07
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 52 2e-05
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 45 0.002
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 44 0.004
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 44 0.007
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 43 0.011
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.046
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 40 0.061
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 40 0.080
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 40 0.080
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 39 0.19
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 38 0.25
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 38 0.25
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 38 0.25
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 38 0.43
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 38 0.43
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 38 0.43
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 37 0.57
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 37 0.57
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 37 0.57
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 37 0.75
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 37 0.75
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 36 0.99
UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomon... 36 0.99
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 36 0.99
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 36 0.99
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 36 0.99
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 36 1.3
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 36 1.3
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 36 1.3
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 36 1.3
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 36 1.3
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 36 1.7
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 36 1.7
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 36 1.7
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 36 1.7
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 36 1.7
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 36 1.7
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 36 1.7
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.3
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 35 2.3
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 35 3.0
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 35 3.0
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 35 3.0
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 34 4.0
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 4.0
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 34 4.0
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 4.0
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 34 4.0
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 34 4.0
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 34 4.0
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 34 4.0
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 34 5.3
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 34 5.3
UniRef50_A6GGG0 Cluster: Beta-lactamase; n=1; Plesiocystis pacif... 34 5.3
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 34 5.3
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 34 5.3
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 33 7.0
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 33 7.0
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 33 7.0
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 33 7.0
UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp... 33 7.0
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 33 7.0
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 33 7.0
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 33 9.2
UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7; Anaplasmatacea... 33 9.2
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 33 9.2
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 33 9.2
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 33 9.2
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 33 9.2
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 33 9.2
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 148 bits (359), Expect = 2e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR
Sbjct: 64 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
Query: 436 GYHRQYFP 459
GYHRQYFP
Sbjct: 124 GYHRQYFP 131
Score = 68.1 bits (159), Expect = 3e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIAEKVSGTVKWFNVKSGYGFINRNDTKED
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 62
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 138 bits (333), Expect = 2e-31
Identities = 63/68 (92%), Positives = 65/68 (95%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPVKGSPYAADKRR
Sbjct: 55 FVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPVKGSPYAADKRR 114
Query: 436 GYHRQYFP 459
GY+RQY+P
Sbjct: 115 GYYRQYYP 122
Score = 68.1 bits (159), Expect = 3e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIAEKVSGTVKWFNVKSGYGFINRNDTKED
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 53
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 111 bits (267), Expect = 2e-23
Identities = 52/61 (85%), Positives = 55/61 (90%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPVKGSPYAADKRR
Sbjct: 56 FVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPVKGSPYAADKRR 115
Query: 436 G 438
G
Sbjct: 116 G 116
Score = 60.9 bits (141), Expect = 4e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
+IA KV+GTVKWFNVKSGYGFINRND K+D
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQD 54
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 108 bits (259), Expect = 2e-22
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAA+KRR
Sbjct: 36 FVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPVKGSQYAAEKRR 95
Query: 436 GY 441
G+
Sbjct: 96 GF 97
Score = 58.4 bits (135), Expect = 2e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA KV+G VKWFNVKSGYGFINR DT+ED
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQED 34
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 101 bits (241), Expect = 3e-20
Identities = 51/67 (76%), Positives = 53/67 (79%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FV Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADKRR
Sbjct: 95 FVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADKRR 154
Query: 436 GYHRQYF 456
GY RQY+
Sbjct: 155 GY-RQYY 160
Score = 51.6 bits (118), Expect = 2e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRN 238
+IA KV+GTVKWFNVKSGYGFINR+
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRS 88
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 101 bits (241), Expect = 3e-20
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+RR
Sbjct: 117 FVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR 176
Query: 436 GYHRQYF 456
Y R Y+
Sbjct: 177 -YRRGYY 182
Score = 60.1 bits (139), Expect = 7e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A KV GTVKWFNV++GYGFINRNDTKED
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKED 115
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 99 bits (238), Expect = 7e-20
Identities = 49/67 (73%), Positives = 53/67 (79%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+RR
Sbjct: 114 FVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR 173
Query: 436 GYHRQYF 456
Y R YF
Sbjct: 174 -YRRGYF 179
Score = 60.1 bits (139), Expect = 7e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A KV GTVKWFNV++GYGFINRNDTKED
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKED 112
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 99 bits (238), Expect = 7e-20
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV+GS YAAD+RR
Sbjct: 19 FVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR 78
Query: 436 GYHRQYF 456
Y R Y+
Sbjct: 79 -YRRGYY 84
Score = 38.7 bits (86), Expect = 0.19
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 203 NVKSGYGFINRNDTKED 253
NV++GYGFINRNDTKED
Sbjct: 1 NVRNGYGFINRNDTKED 17
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 99.5 bits (237), Expect = 9e-20
Identities = 48/62 (77%), Positives = 53/62 (85%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADKRR
Sbjct: 89 FVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRR 147
Query: 436 GY 441
+
Sbjct: 148 NF 149
Score = 63.3 bits (147), Expect = 8e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA KV+GTVKWFNVKSGYGFINRNDT+ED
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTRED 87
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 99.5 bits (237), Expect = 9e-20
Identities = 48/66 (72%), Positives = 54/66 (81%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 85 FVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--R 142
Query: 436 GYHRQY 453
++R+Y
Sbjct: 143 NHYRRY 148
Score = 60.9 bits (141), Expect = 4e-08
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA KV GTVKWFNV++GYGFINRNDTKED
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKED 83
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 99.1 bits (236), Expect = 1e-19
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PVKGS YA +KRR
Sbjct: 29 FVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNKRR 88
Query: 436 GYHRQYFP 459
+ R++FP
Sbjct: 89 -FRRRFFP 95
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINRNDTKED 253
V GTVKWFNV++GYGFINRNDTKED
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKED 27
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 98.7 bits (235), Expect = 2e-19
Identities = 49/69 (71%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADKR 432
F+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAAD+R
Sbjct: 52 FIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRR 111
Query: 433 RGYHRQYFP 459
R Y +Y P
Sbjct: 112 R-YKPRYKP 119
Score = 52.0 bits (119), Expect = 2e-05
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A SG VKWFNV++GYGF+NR+D KED
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKED 50
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 98.3 bits (234), Expect = 2e-19
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PVKGS YA +KRR
Sbjct: 47 FVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPVKGSRYAPNKRR 106
Query: 436 GYHRQYFP 459
+ R+++P
Sbjct: 107 -FRRRFYP 113
Score = 58.8 bits (136), Expect = 2e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA V GTVKWFNV++GYGFINRNDTKED
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKED 45
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 97.5 bits (232), Expect = 4e-19
Identities = 47/68 (69%), Positives = 53/68 (77%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++R+
Sbjct: 120 FVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179
Query: 436 GYHRQYFP 459
R++ P
Sbjct: 180 S--RRFIP 185
Score = 57.6 bits (133), Expect = 4e-07
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A +V GTVKWFNV++GYGFINRNDTKED
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKED 118
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 95.5 bits (227), Expect = 2e-18
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V+GS YAAD+RR
Sbjct: 59 FVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRRR 118
Query: 436 GYHRQYFP 459
++P
Sbjct: 119 FRRGGWYP 126
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
+IA +VSGTVKWFNVKSGYGFINR+DTKED
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKED 57
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 93.1 bits (221), Expect = 8e-18
Identities = 46/60 (76%), Positives = 47/60 (78%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV GS YAADKRR
Sbjct: 50 FVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPVVGSKYAADKRR 109
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A KVSGTVKWFNVK+GYGFINR+DTKED
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKED 48
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.5 bits (217), Expect = 2e-17
Identities = 45/64 (70%), Positives = 49/64 (76%)
Frame = +1
Query: 268 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 447
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++RR R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 448 QYFP 459
Y P
Sbjct: 130 FYRP 133
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 82.6 bits (195), Expect = 1e-14
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 429
FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 47 FVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
Score = 55.6 bits (128), Expect = 2e-06
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V A KV GTVKWFNVK+GYGFINR DT ED
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNED 45
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 79.8 bits (188), Expect = 8e-14
Identities = 38/64 (59%), Positives = 45/64 (70%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S Y AD+
Sbjct: 57 FVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDSKYTADRNH 116
Query: 436 GYHR 447
H+
Sbjct: 117 CKHQ 120
Score = 39.5 bits (88), Expect = 0.11
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA KV GT+K V +G G INRNDTKED
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKED 55
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 72.1 bits (169), Expect = 2e-11
Identities = 35/56 (62%), Positives = 41/56 (73%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 423
FVHQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS YAA
Sbjct: 55 FVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGSQYAA 108
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/64 (48%), Positives = 41/64 (64%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
F+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS YA R
Sbjct: 55 FIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYALRYPR 114
Query: 436 GYHR 447
G R
Sbjct: 115 GRGR 118
Score = 45.6 bits (103), Expect = 0.002
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINRNDTKED 253
++G VKWFNVK GYGF+ RND +ED
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQED 53
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 60.9 bits (141), Expect = 4e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+A KV GTVKWFNV++GYGFINRNDTKED
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKED 60
Score = 46.4 bits (105), Expect = 0.001
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 355 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 456
+G EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADRRR-YRRGYY 97
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 56.8 bits (131), Expect = 7e-07
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
+FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 56.8 bits (131), Expect = 7e-07
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVH++ I + N +S+GDGE VEF ++A + VTGPG +PVKGSP+ A +R
Sbjct: 60 FVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPVKGSPFVA--KR 110
Query: 436 GYHR 447
G HR
Sbjct: 111 GGHR 114
Score = 47.2 bits (107), Expect = 5e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +2
Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253
+++++GTVKWFN K G+GFI R+DT ED
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGED 58
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 56.8 bits (131), Expect = 7e-07
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
FVHQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V GS +A
Sbjct: 29 FVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAVLGSKFA 82
Score = 42.3 bits (95), Expect = 0.015
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G VKW+NVK GYGFI+R+D ED
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDED 27
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 56.4 bits (130), Expect = 9e-07
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417
FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 92 FVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
Score = 36.3 bits (80), Expect = 0.99
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTTHVRLCARSATER 325
I + G VKW++V YGFI+RND ++D + H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKD---------IFVHQTAIAKSATEK 105
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VIA KV G V WFNV++GY FINRNDTKED
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKED 120
Score = 38.3 bits (85), Expect = 0.25
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVE 333
FVHQT I +NNP K + SVGDGE VE
Sbjct: 122 FVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINR 235
V+A +V GTVKWFNV++GYGFINR
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINR 79
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 44.4 bits (100), Expect = 0.004
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG--FEAAGVTGPGGEPVKGSP 414
FVHQ+ I + RS+ +GE VEF+V+ E+ +AA VTGP G V+G+P
Sbjct: 30 FVHQSTIHADG----FRSLAEGEPVEFSVITDERSGKLKAADVTGPNGAAVRGAP 80
Score = 36.7 bits (81), Expect = 0.75
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKED 253
K++GT KWFN + GYGF+ +D D
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPD 28
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 43.6 bits (98), Expect = 0.007
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 411
FVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 63 FVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 42.7 bits (96), Expect = 0.011
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKED 253
+ E+V GTVKWFNV G+GFI+ +D ED
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDDGGED 29
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.046
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 304 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 411
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
Score = 36.3 bits (80), Expect = 0.99
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTTHVRLCARSATERRWS 334
SG KWFNV+ G+GFI+ T +G + P V H + R+A W+
Sbjct: 8 SGFCKWFNVRMGFGFISM--THSEGSPVDPPLDVFVHQSVGGRNAKFPLWA 56
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 40.3 bits (90), Expect = 0.061
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
FVHQT I+ RSV +GE VE+ V + +A VTGP G VKG+P + R
Sbjct: 31 FVHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAPRRRHRNR 86
Score = 33.5 bits (73), Expect = 7.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKED 253
+A + G VKWFN G+GFI +D E+
Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEE 29
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 39.9 bits (89), Expect = 0.080
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRND 241
V+AE+ +GTVKWFN GYGFI R +
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN 92
Score = 35.1 bits (77), Expect = 2.3
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 384
FVH AI + R S+ +G+ VEF+V+ G+KG +A V G
Sbjct: 97 FVHYRAIRGDGHR----SLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 39.9 bits (89), Expect = 0.080
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 411
FVHQ++I + RS+ +G+ V+F +KG EA V GPGGE + G+
Sbjct: 56 FVHQSSI----DMEGFRSLQEGDRVKFWYKPSKKGLEAVKVVGPGGEKLVGA 103
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 38.7 bits (86), Expect = 0.19
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253
+E+V GTVKWF+ G+GFI +D ED
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGED 30
Score = 37.9 bits (84), Expect = 0.32
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPV 402
FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG V
Sbjct: 32 FVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 38.3 bits (85), Expect = 0.25
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINRNDTKED 253
++GTVKWF+ + GYGF+ R+D + D
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQGD 42
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 38.3 bits (85), Expect = 0.25
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADKR 432
FVHQ +N + RS+ E VE+ + +KG +A V+GP G PVKG D+R
Sbjct: 37 FVHQ----QNIKVEGFRSLAQDERVEYEIETDDKGRRKAVNVSGPNGAPVKG-----DRR 87
Query: 433 RGYHR 447
RG R
Sbjct: 88 RGRGR 92
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 38.3 bits (85), Expect = 0.25
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 411
FVHQ+AI + RS+ +GE V+ + +KG A VT PGG VKG+
Sbjct: 509 FVHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGA 556
Score = 37.1 bits (82), Expect = 0.57
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
+G+VKWFN+ G+GFI R+D ED
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGED 507
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 37.5 bits (83), Expect = 0.43
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
+GTVKWFN GYGFI +D +D
Sbjct: 97 TGTVKWFNATKGYGFIQPDDGSQD 120
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 37.5 bits (83), Expect = 0.43
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVKWFN + GYGFIN ++ D
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGND 40
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 37.5 bits (83), Expect = 0.43
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 405
FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 37 FVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 37.1 bits (82), Expect = 0.57
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRND 241
+GTVKWFN + G+GFI+R D
Sbjct: 3 NGTVKWFNAEKGFGFISRED 22
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 37.1 bits (82), Expect = 0.57
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253
E+ SGTVK+FN G+GFI R+D + D
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDDGQAD 205
Score = 33.1 bits (72), Expect = 9.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVK+FN G+GF+ R+D ED
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGED 108
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 37.1 bits (82), Expect = 0.57
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKE 250
GTVKWFNV GYGF+ R +E
Sbjct: 79 GTVKWFNVSKGYGFVTRASGEE 100
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 36.7 bits (81), Expect = 0.75
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 173 EKVSGTVKWFNVKSGYGFINRND 241
++ GTVKWFNV G+GFI R +
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE 103
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 36.7 bits (81), Expect = 0.75
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKE 250
K++GTVKWFN G+GFI+ D K+
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGKD 27
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 36.3 bits (80), Expect = 0.99
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
+ TVKWF+ K GYGFI+ D ED
Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGED 26
>UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomonas
aeruginosa|Rep: ABC-transporter protein - Pseudomonas
aeruginosa
Length = 585
Score = 36.3 bits (80), Expect = 0.99
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 724 WR*A*FCRPCPGWKLRGRTRRNPPLF 647
WR + RPC G+ RGR RRN PLF
Sbjct: 80 WRPSSMMRPCTGYMHRGRARRNSPLF 105
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 36.3 bits (80), Expect = 0.99
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G VKWFNVK G+GFI R D ED
Sbjct: 108 GLVKWFNVKKGFGFITR-DNGED 129
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 36.3 bits (80), Expect = 0.99
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGL 259
++E + GTVKWF+ + GYGFI T EDG+
Sbjct: 1 MSETLQGTVKWFSAQKGYGFI----TGEDGI 27
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 36.3 bits (80), Expect = 0.99
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKED 253
++ K++G VKWFN G+GFI +D +D
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKD 29
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 35.9 bits (79), Expect = 1.3
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
+GTVKWFNV+ G+GFI +D D
Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSD 26
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 35.9 bits (79), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKEDGLC 262
+GTVKWFN G+GFI ++ ED C
Sbjct: 36 TGTVKWFNDAKGFGFITQDGGGEDVFC 62
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 35.9 bits (79), Expect = 1.3
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253
E+ +GTVKWFN + GYGFI +T ED
Sbjct: 58 ERQNGTVKWFNDEKGYGFIT-PETGED 83
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 35.9 bits (79), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKED 253
K++G VKWFN + G+GFI D +D
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKD 29
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 35.9 bits (79), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKEDGLC 262
+GTVKWFN G+GFI ++ ED C
Sbjct: 3 TGTVKWFNDAKGFGFITQDGGGEDVFC 29
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 35.5 bits (78), Expect = 1.7
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTT 289
++ K +G+VKWFN G+GFI+ + ED L + S V+T
Sbjct: 1 MSNKSTGSVKWFNETKGFGFISPENGGED-LFVHFQSIVST 40
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 35.5 bits (78), Expect = 1.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVKWFN GYGFI +D D
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGND 40
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 35.5 bits (78), Expect = 1.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKEDGLC 262
+GTVKWFN G+GFI ++D D C
Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFC 29
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 35.5 bits (78), Expect = 1.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKEDGL 259
++SG VKWF+ GYGFI +D + GL
Sbjct: 17 RISGRVKWFDTGKGYGFIVPDDPGQTGL 44
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 35.5 bits (78), Expect = 1.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVKWFN + G+GFI +D+ D
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGD 26
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 35.5 bits (78), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKED 253
K+ G VKWFN G+GFI D +D
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKD 28
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 35.5 bits (78), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKED 253
K++G VKWFN G+GFI +D +D
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKD 29
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 35.1 bits (77), Expect = 2.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRND 241
GTVKWFN + GYGFI D
Sbjct: 4 GTVKWFNAEKGYGFITGED 22
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 35.1 bits (77), Expect = 2.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRND 241
+ +K+ GTVKWFN G GFI R++
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQRDN 25
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 34.7 bits (76), Expect = 3.0
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKE 250
+GTVKW++ + GYGF++ ND ++
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGRD 27
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 34.7 bits (76), Expect = 3.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253
++ G VKWFNV G+GF+ R D ED
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR-DNGED 109
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 34.7 bits (76), Expect = 3.0
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
SGTVKWFN G+GFI +D D
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATD 26
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 34.3 bits (75), Expect = 4.0
Identities = 26/76 (34%), Positives = 31/76 (40%)
Frame = +1
Query: 184 GHCEMVQRQEWIWFHQQE*HQGRWFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 363
G C+ + F + G FVHQ I RS+ E VE+ EKG
Sbjct: 65 GKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKM----VGYRSLDTNEEVEYKFQFSEKGR 120
Query: 364 EAAGVTGPGGEPVKGS 411
EA VTG G KGS
Sbjct: 121 EATTVTGVDGGDCKGS 136
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 34.3 bits (75), Expect = 4.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRND 241
++++ GTVKWFN G+GFI R +
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQREN 25
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 34.3 bits (75), Expect = 4.0
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 378
FVH AI + RS+ DGE VEF+VV G+KG +A V
Sbjct: 30 FVHFRAIQGDG----YRSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 4.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRND 241
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 34.3 bits (75), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 176 KVSGTVKWFNVKSGYGFINRNDTKED 253
K+ G VKWFN G+GFI D +D
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKD 28
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 34.3 bits (75), Expect = 4.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRND 241
GTVKWFN + G+GFI R +
Sbjct: 4 GTVKWFNAEKGFGFIEREN 22
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 34.3 bits (75), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINRND 241
+ G VKWFN + G+GFI R D
Sbjct: 1 MQGRVKWFNAEKGFGFIERED 21
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 34.3 bits (75), Expect = 4.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKED 253
++++ SGTVKWFN + G+GFI +D
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDD 29
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 33.9 bits (74), Expect = 5.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVKWFN GYGF+ +D +D
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKD 78
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 33.9 bits (74), Expect = 5.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 188 TVKWFNVKSGYGFINRNDTKED 253
TVKWFN GYGF+ RN ++D
Sbjct: 108 TVKWFNRTKGYGFLIRNADQQD 129
>UniRef50_A6GGG0 Cluster: Beta-lactamase; n=1; Plesiocystis pacifica
SIR-1|Rep: Beta-lactamase - Plesiocystis pacifica SIR-1
Length = 615
Score = 33.9 bits (74), Expect = 5.3
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +1
Query: 178 SIGHCEMVQRQEWIWFHQQE*HQGRWFVHQTA---IARNNPRKAV--RSVGDGEAVEFAV 342
S G+ + R E+ W H GR F H + + AV S+G GEAVE
Sbjct: 331 SFGYAWFLDRHEFDWLGSVASHGGRTFYHHAVLIILPEHGLAVAVAANSLGAGEAVETLA 390
Query: 343 VAG--EKGFEAAGVTGPGGEPVKGSPYAADKRR 435
+E G+ PGG P P A K+R
Sbjct: 391 AEALLMAVYEKHGLESPGGAP-PPEPDAPTKKR 422
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 33.9 bits (74), Expect = 5.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
GTVKWFN GYGFI +ED
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEED 26
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 33.9 bits (74), Expect = 5.3
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253
+++ +GTVKWF+ + G+GFI +D ED
Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGED 31
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 33.9 bits (74), Expect = 5.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253
++ GTVKWF+ + G+GFI +D +D
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDD 39
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 33.5 bits (73), Expect = 7.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRND 241
+G VKWFN + G+GF++R+D
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD 22
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 33.5 bits (73), Expect = 7.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRN 238
++ V+GTVKWFN G+GFI ++
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFIQQD 24
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 33.5 bits (73), Expect = 7.0
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKEDGLC 262
GTVKWFN G+GFI D ED C
Sbjct: 4 GTVKWFNDAKGFGFI-AQDNGEDVFC 28
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 33.5 bits (73), Expect = 7.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKED 253
+GTVKWFN GYGFI ++ +D
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKD 26
>UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp.
CCS2|Rep: Cold shock protein - Roseobacter sp. CCS2
Length = 151
Score = 33.5 bits (73), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+ E++ VKWF+ GYGF+N ED
Sbjct: 80 VLEERIPVRVKWFDPSKGYGFVNAFGCAED 109
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 33.5 bits (73), Expect = 7.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINR 235
VSG VKWFN + G+GFI R
Sbjct: 33 VSGIVKWFNDEKGFGFIER 51
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 33.5 bits (73), Expect = 7.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G+ KWFNV GYGF+ + T ED
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 33.1 bits (72), Expect = 9.2
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 289 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 396
P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 57 PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7;
Anaplasmataceae|Rep: Cold shock protein - Anaplasma
marginale (strain St. Maries)
Length = 92
Score = 33.1 bits (72), Expect = 9.2
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 182 SGTVKWFNVKSGYGFINRNDTKEDG 256
+G VKWF+V+ GYGFI + D +DG
Sbjct: 13 TGHVKWFSVEKGYGFICK-DGSDDG 36
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 33.1 bits (72), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 179 VSGTVKWFNVKSGYGFINRNDTKEDGL 259
++G VKWFN GYGFI ++ +D L
Sbjct: 4 LNGKVKWFNNAKGYGFIIKDGKPDDDL 30
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 33.1 bits (72), Expect = 9.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINR 235
G VKWFN + GYGFI R
Sbjct: 4 GRVKWFNAEKGYGFIER 20
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 33.1 bits (72), Expect = 9.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G VKWFN GYGFI+ +D D
Sbjct: 14 GRVKWFNQSEGYGFISPHDGGSD 36
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 33.1 bits (72), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V V+ TVKWFN G+GF+ +D D
Sbjct: 47 VTQTNVTATVKWFNASKGFGFVAPSDGTPD 76
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 33.1 bits (72), Expect = 9.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKED 253
++ K++G VKWF+ G+GFI+ D +D
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKD 29
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,217,771
Number of Sequences: 1657284
Number of extensions: 12487756
Number of successful extensions: 40024
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 38252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40007
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -