Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0470
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   6.0  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   7.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   7.9  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 620 STAKIATEKTALRWYNASFLTLISLCTPLVG 528
           S +K+  E    RWY+ S+   +++C  ++G
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIG 828


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = -2

Query: 680 ARTHSAEPSSIHWARTSPTASTAKIATEKTALRWYNASFLTLISLCTPLVGRGSTT 513
           A  H A  +S  W R      T+ ++  +   RW++ +F  ++   + +    +TT
Sbjct: 610 ATVHLATCASHDWKRVDRLMMTSYVSLNQAQRRWFSKAFAKVVYGSSKVGSTSATT 665


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 449 NISLVKVADEAVKELHAEEDRTSW 520
           N  ++KV+DEA +++  EE+   W
Sbjct: 505 NKGVIKVSDEAKEKIQKEEEYNKW 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,767
Number of Sequences: 5004
Number of extensions: 45478
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)