Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0470
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 40 0.002
08_01_0202 - 1638978-1639571 39 0.006
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 30 2.7
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.7
04_04_1582 - 34590698-34591199,34593849-34594690 29 4.7
03_01_0483 + 3689155-3689814 29 6.3
03_01_0056 - 471338-471919,472013-472213 29 6.3
11_06_0416 + 23307984-23308281,23310083-23310900 28 8.3
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 28 8.3
>02_01_0158 - 1103461-1104186
Length = 241
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 408
FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 33 FVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 36.3 bits (80), Expect = 0.031
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253
A + GTVKWFN G+GFI+ +D ED
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSED 31
>08_01_0202 - 1638978-1639571
Length = 197
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253
+E+V GTVKWF+ G+GFI +D ED
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGED 30
Score = 38.3 bits (85), Expect = 0.008
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYAADK 429
FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 32 FVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSGGG 87
Query: 430 RRGY 441
RGY
Sbjct: 88 DRGY 91
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 384 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKPSSLVSFL 232
T N ++ FLP G + L + D ++ W ++ + SL HK S F+
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHKSMSPEDFV 341
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 319 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 408
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 313 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 435
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 313 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 438
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 689 LEIARTHSAEPSSIHWARTSPTASTAKI-ATEKTALRW 579
L+IA +A P+S SP+ +T ++ A +K A+RW
Sbjct: 199 LKIAGCEAAAPASCQPVPASPSGATGELSAQQKAAMRW 236
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 469 HLDEGNIGGGSHGACLQHKVSLLLAHH 389
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +1
Query: 232 QE*HQGRWFV--HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGG 393
Q+ H G + HQ + P+ S DG A +E + G E+ G G GG
Sbjct: 17 QQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGG 76
Query: 394 EPVKGSPYAADKRRGYHR 447
P +++ YHR
Sbjct: 77 SGGDQDPNQRPRKKRYHR 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,756,783
Number of Sequences: 37544
Number of extensions: 381631
Number of successful extensions: 1355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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