Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0470
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   33   0.22 
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   6.4  
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_18392| Best HMM Match : DUF1635 (HMM E-Value=5.3)                   29   6.4  
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 355 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 447
           +G EA+ VTGP GEPV+GS YA D+RR  +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43


>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 167 IAEKVSGTVKWFNVKSGYGFI 229
           ++ + +GTVKWFN + GYGFI
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFI 32


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 277 ARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG-EPVKGSPYAADKRRG 438
           AR    +AVR    GE    +V  G  G    G  G GG E V+G+PY  ++  G
Sbjct: 395 AREYLARAVREGLRGEEGSPSVFLGGGGRGGGGGDGGGGGEGVQGTPYTPEEEEG 449


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 352  EKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 459
            EK  E      P  EP+   P  A++R  YHR  FP
Sbjct: 990  EKAAEKLAAATPSEEPLSHHP-VAEQRSAYHRPEFP 1024


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 593 FFPSQFSRWTPWGRSW 640
           +FPS F+ W+PW  +W
Sbjct: 3   WFPSSFNSWSPWTWNW 18


>SB_18392| Best HMM Match : DUF1635 (HMM E-Value=5.3)
          Length = 178

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 535 WLGGGPRRPILLCVELLHRLVRHLDEG 455
           W+ G PRRP  L +E+   L+  L EG
Sbjct: 96  WMAGDPRRPYPLDIEMRSGLLGRLGEG 122


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 396 ASKRLTLCCRQAPWLPP 446
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,523,655
Number of Sequences: 59808
Number of extensions: 388351
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)