Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0470
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 83 3e-16
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 57 2e-08
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 56 2e-08
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 53 2e-07
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.20
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.20
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.20
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 9.8
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 28 9.8
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 429
FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 47 FVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V A KV GTVKWFNVK+GYGFINR DT ED
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNED 45
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
+FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VI V G VKWF+V+ YGF+ R+ ++
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
+FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
VI V G VKWF+V+ YGF+ R+ ++
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417
FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 92 FVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTTHVRLCARSATER 325
I + G VKW++V YGFI+RND ++D + H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKD---------IFVHQTAIAKSATEK 105
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417
FVHQTAI++++ K +R++ D E V F +V G+ G EAA VTGP G V GS Y
Sbjct: 90 FVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
V+ + G VKW++V YGFI+R+D ++D
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKD 88
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G+ KWFNV GYGF+ + T ED
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGED 46
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G+ KWFNV GYGF+ + T ED
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G+ KWFNV GYGF+ + T ED
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
G+ KWFNV GYGF+ + T ED
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 581 WYNASFLTLISLCTPLVGRGST 516
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 581 WYNASFLTLISLCTPLVGRGST 516
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 581 WYNASFLTLISLCTPLVGRGST 516
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,523
Number of Sequences: 27780
Number of extensions: 282720
Number of successful extensions: 924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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