BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0470 (858 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 83 3e-16 Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 57 2e-08 AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 57 2e-08 U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 56 2e-08 U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 53 2e-07 Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 33 0.20 Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.20 U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.20 U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.20 Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 9.8 Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 9.8 U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 28 9.8 >Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical protein F33A8.3 protein. Length = 208 Score = 82.6 bits (195), Expect = 3e-16 Identities = 38/58 (65%), Positives = 43/58 (74%) Frame = +1 Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 429 FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+ Sbjct: 47 FVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104 Score = 55.6 bits (128), Expect = 4e-08 Identities = 24/30 (80%), Positives = 25/30 (83%) Frame = +2 Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253 V A KV GTVKWFNVK+GYGFINR DT ED Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNED 45 >Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical protein Y39A1C.3 protein. Length = 294 Score = 56.8 bits (131), Expect = 2e-08 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Frame = +1 Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420 +FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173 Score = 32.3 bits (70), Expect = 0.45 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253 VI V G VKWF+V+ YGF+ R+ ++ Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113 >AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical protein Y39A1C.3 protein. Length = 294 Score = 56.8 bits (131), Expect = 2e-08 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Frame = +1 Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420 +FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173 Score = 32.3 bits (70), Expect = 0.45 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253 VI V G VKWF+V+ YGF+ R+ ++ Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113 >U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box protein 2 protein. Length = 267 Score = 56.4 bits (130), Expect = 2e-08 Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Frame = +1 Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417 FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y Sbjct: 92 FVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146 Score = 36.3 bits (80), Expect = 0.028 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +2 Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTTHVRLCARSATER 325 I + G VKW++V YGFI+RND ++D + H A+SATE+ Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKD---------IFVHQTAIAKSATEK 105 >U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box protein 3 protein. Length = 265 Score = 53.2 bits (122), Expect = 2e-07 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = +1 Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417 FVHQTAI++++ K +R++ D E V F +V G+ G EAA VTGP G V GS Y Sbjct: 90 FVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144 Score = 33.9 bits (74), Expect = 0.15 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253 V+ + G VKW++V YGFI+R+D ++D Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKD 88 >Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical protein F02E9.2b protein. Length = 196 Score = 33.5 bits (73), Expect = 0.20 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 185 GTVKWFNVKSGYGFINRNDTKED 253 G+ KWFNV GYGF+ + T ED Sbjct: 24 GSCKWFNVSKGYGFVIDDITGED 46 >Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical protein F02E9.2a protein. Length = 227 Score = 33.5 bits (73), Expect = 0.20 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 185 GTVKWFNVKSGYGFINRNDTKED 253 G+ KWFNV GYGF+ + T ED Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77 >U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. Length = 227 Score = 33.5 bits (73), Expect = 0.20 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 185 GTVKWFNVKSGYGFINRNDTKED 253 G+ KWFNV GYGF+ + T ED Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77 >U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. Length = 227 Score = 33.5 bits (73), Expect = 0.20 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 185 GTVKWFNVKSGYGFINRNDTKED 253 G+ KWFNV GYGF+ + T ED Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77 >Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical protein F56H9.5 protein. Length = 1139 Score = 27.9 bits (59), Expect = 9.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 581 WYNASFLTLISLCTPLVGRGST 516 W NASFLTL++ P++G+ T Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392 >Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical protein F56H9.5 protein. Length = 1139 Score = 27.9 bits (59), Expect = 9.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 581 WYNASFLTLISLCTPLVGRGST 516 W NASFLTL++ P++G+ T Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392 >U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein protein. Length = 1139 Score = 27.9 bits (59), Expect = 9.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 581 WYNASFLTLISLCTPLVGRGST 516 W NASFLTL++ P++G+ T Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,257,523 Number of Sequences: 27780 Number of extensions: 282720 Number of successful extensions: 924 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 916 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2139963672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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