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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0470
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    83   3e-16
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    57   2e-08
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    57   2e-08
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    56   2e-08
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    53   2e-07
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       33   0.20 
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       33   0.20 
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    28   9.8  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 38/58 (65%), Positives = 43/58 (74%)
 Frame = +1

Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 429
           FVHQTAI  NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 47  FVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
           V A KV GTVKWFNVK+GYGFINR DT ED
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNED 45


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
           +FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
           VI   V G VKWF+V+  YGF+ R+   ++
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 253 WFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 420
           +FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 117 FFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
           VI   V G VKWF+V+  YGF+ R+   ++
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +1

Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417
           FVHQTAIA++   K  +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 92  FVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +2

Query: 167 IAEKVSGTVKWFNVKSGYGFINRNDTKEDGLCIRLPSPVTTHVRLCARSATER 325
           I   + G VKW++V   YGFI+RND ++D         +  H    A+SATE+
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKD---------IFVHQTAIAKSATEK 105


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +1

Query: 256 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 417
           FVHQTAI++++  K  +R++ D E V F +V G+ G EAA VTGP G  V GS Y
Sbjct: 90  FVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 164 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 253
           V+   + G VKW++V   YGFI+R+D ++D
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKD 88


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
           G+ KWFNV  GYGF+  + T ED
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGED 46


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
           G+ KWFNV  GYGF+  + T ED
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGED 77


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
           G+ KWFNV  GYGF+  + T ED
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGED 77


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 GTVKWFNVKSGYGFINRNDTKED 253
           G+ KWFNV  GYGF+  + T ED
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGED 77


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 581 WYNASFLTLISLCTPLVGRGST 516
           W NASFLTL++   P++G+  T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 581 WYNASFLTLISLCTPLVGRGST 516
           W NASFLTL++   P++G+  T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 581 WYNASFLTLISLCTPLVGRGST 516
           W NASFLTL++   P++G+  T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,523
Number of Sequences: 27780
Number of extensions: 282720
Number of successful extensions: 924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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