BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0470 (858 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 38 0.011 At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 34 0.14 At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 33 0.18 At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 30 1.7 At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 30 1.7 At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 30 1.7 At2g29560.1 68415.m03590 enolase, putative similar to enolase [S... 29 5.2 At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 28 6.9 At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 28 9.1 >At4g36020.1 68417.m05128 cold-shock DNA-binding family protein contains Pfam domains, PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle Length = 299 Score = 37.5 bits (83), Expect = 0.011 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +1 Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 405 FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K Sbjct: 37 FVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83 Score = 32.3 bits (70), Expect = 0.42 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 170 AEKVSGTVKWFNVKSGYGFINRND 241 A + +G V WFN GYGFI +D Sbjct: 8 AARSTGKVNWFNASKGYGFITPDD 31 >At2g21060.1 68415.m02500 cold-shock DNA-binding family protein / glycine-rich protein (GRP2) identical to Glycine-rich protein 2b (AtGRP2b) [Arabidopsis thaliana] SWISS-PROT:Q38896; contains Pfam domains PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle Length = 201 Score = 33.9 bits (74), Expect = 0.14 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253 ++ GTVKWF+ + G+GFI +D +D Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDD 39 Score = 32.7 bits (71), Expect = 0.32 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 411 FVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+ Sbjct: 41 FVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89 >At4g38680.1 68417.m05477 cold-shock DNA-binding family protein contains Pfam domains PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle Length = 203 Score = 33.5 bits (73), Expect = 0.18 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 173 EKVSGTVKWFNVKSGYGFINRNDTKED 253 E+ G+VKWF+ + G+GFI +D +D Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDD 35 Score = 32.7 bits (71), Expect = 0.32 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 256 FVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKGFEAAGVTGPGGEPVKGS 411 FVHQ++I + RS+ EAVEF V + +A V+GP G PV+G+ Sbjct: 37 FVHQSSIRS----EGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQGN 85 >At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook protein 1 (AHP1) identical to AT-hook protein 1 [Arabidopsis thaliana] gi|2598227|emb|CAA10857 Length = 351 Score = 30.3 bits (65), Expect = 1.7 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = +1 Query: 307 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 459 S G+ + + GE G G+TG G EPVK KRRG R+Y P Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108 >At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook protein 1 (AHP1) identical to AT-hook protein 1 [Arabidopsis thaliana] gi|2598227|emb|CAA10857 Length = 351 Score = 30.3 bits (65), Expect = 1.7 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = +1 Query: 307 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 459 S G+ + + GE G G+TG G EPVK KRRG R+Y P Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108 >At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook protein 1 (AHP1) identical to AT-hook protein 1 [Arabidopsis thaliana] gi|2598227|emb|CAA10857 Length = 351 Score = 30.3 bits (65), Expect = 1.7 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = +1 Query: 307 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 459 S G+ + + GE G G+TG G EPVK KRRG R+Y P Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108 >At2g29560.1 68415.m03590 enolase, putative similar to enolase [Spinacia oleracea] gi|8919731|emb|CAB96173 Length = 475 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +1 Query: 649 IEEGSAECVRAISSRGXDDKIRLXAKMARIGDCFSTTFNQPAXGQXKSYQTF 804 ++EG AI+ G +DKI++ +A C T ++ KS Q F Sbjct: 262 LKEGLELVKEAINRTGYNDKIKIAIDIAATNFCLGTKYDLDIKSPNKSGQNF 313 >At2g17870.1 68415.m02070 cold-shock DNA-binding family protein contains Pfam domains, PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle Length = 301 Score = 28.3 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 170 AEKVSGTVKWFNVKSGYGFINRNDTKED 253 A + G V WF+ GYGFI +D E+ Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEE 35 >At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii], Pinus taeda [GI:17978649]; contains non-consensus GG acceptor splice site at exon 4 Length = 317 Score = 27.9 bits (59), Expect = 9.1 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 614 AKIATEKTALRWYNASFLTLISLCTPLV 531 AK TE+ AL W +F +++LC ++ Sbjct: 158 AKTLTEREALEWSKRNFADVVTLCPSVI 185 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,677,052 Number of Sequences: 28952 Number of extensions: 270672 Number of successful extensions: 762 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 742 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1999652000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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