BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0469 (538 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 95 8e-21 SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 95 8e-21 SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 62 7e-11 SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 4.1 SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 7.2 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5 >SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces pombe|chr 1|||Manual Length = 149 Score = 94.7 bits (225), Expect = 8e-21 Identities = 40/72 (55%), Positives = 53/72 (73%) Frame = +3 Query: 39 KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218 K+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR KK Sbjct: 2 KVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKK 61 Query: 219 GQEEEQAKKRTR 254 G EE AKKRTR Sbjct: 62 GISEEHAKKRTR 73 Score = 39.1 bits (87), Expect = 4e-04 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = +2 Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337 +KG +K+ RT K QR IVGA+L I KRN +PEVR Sbjct: 60 KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVR 101 >SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosaccharomyces pombe|chr 3|||Manual Length = 149 Score = 94.7 bits (225), Expect = 8e-21 Identities = 40/72 (55%), Positives = 53/72 (73%) Frame = +3 Query: 39 KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218 K+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR KK Sbjct: 2 KVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKK 61 Query: 219 GQEEEQAKKRTR 254 G EE AKKRTR Sbjct: 62 GISEEHAKKRTR 73 Score = 39.1 bits (87), Expect = 4e-04 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = +2 Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337 +KG +K+ RT K QR IVGA+L I KRN +PEVR Sbjct: 60 KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVR 101 >SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 192 Score = 61.7 bits (143), Expect = 7e-11 Identities = 26/60 (43%), Positives = 33/60 (55%) Frame = +3 Query: 39 KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218 ++ C + +YPGHG V+ D K F F SKC M+RNPRKV WT YR+ K Sbjct: 2 RVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61 >SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 25.8 bits (54), Expect = 4.1 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = -3 Query: 122 EGFSIHFNHGLAMAWIYFVSTI 57 +GF H+ G A+ W+YF + + Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451 >SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 2344 Score = 25.0 bits (52), Expect = 7.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -1 Query: 268 ELLGPLVRFFACSSSWPFLNLRLYRT--VHVTLRGF 167 EL P R FAC W FL + R + VTL+ F Sbjct: 2140 ELQKPSGRSFACKKRWGFLQMPCTRENFLKVTLQVF 2175 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 24.6 bits (51), Expect = 9.5 Identities = 7/17 (41%), Positives = 13/17 (76%) Frame = +1 Query: 61 VDTKYIQAMARPWLKWM 111 V+ K+IQ + + W+KW+ Sbjct: 137 VEQKWIQFLHKSWMKWL 153 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,591,099 Number of Sequences: 5004 Number of extensions: 27298 Number of successful extensions: 79 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 222442660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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