Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0469
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    95   8e-21
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    95   8e-21
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    62   7e-11
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 40/72 (55%), Positives = 53/72 (73%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KK
Sbjct: 2   KVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKK 61

Query: 219 GQEEEQAKKRTR 254
           G  EE AKKRTR
Sbjct: 62  GISEEHAKKRTR 73



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG     +K+   RT K QR IVGA+L  I  KRN +PEVR
Sbjct: 60  KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVR 101


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 40/72 (55%), Positives = 53/72 (73%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KK
Sbjct: 2   KVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKK 61

Query: 219 GQEEEQAKKRTR 254
           G  EE AKKRTR
Sbjct: 62  GISEEHAKKRTR 73



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG     +K+   RT K QR IVGA+L  I  KRN +PEVR
Sbjct: 60  KKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVR 101


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 26/60 (43%), Positives = 33/60 (55%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           ++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   K
Sbjct: 2   RVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 122 EGFSIHFNHGLAMAWIYFVSTI 57
           +GF  H+  G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 268  ELLGPLVRFFACSSSWPFLNLRLYRT--VHVTLRGF 167
            EL  P  R FAC   W FL +   R   + VTL+ F
Sbjct: 2140 ELQKPSGRSFACKKRWGFLQMPCTRENFLKVTLQVF 2175


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 61  VDTKYIQAMARPWLKWM 111
           V+ K+IQ + + W+KW+
Sbjct: 137 VEQKWIQFLHKSWMKWL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,099
Number of Sequences: 5004
Number of extensions: 27298
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)