Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0469
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)       120   1e-27
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        82   3e-16
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        79   2e-15
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        79   2e-15
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         79   2e-15
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         79   2e-15
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        77   1e-14
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        76   2e-14
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_12513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)                   27   9.7  
SB_9015| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score =  120 bits (288), Expect = 1e-27
 Identities = 53/72 (73%), Positives = 59/72 (81%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K+ LC YSGYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK KK
Sbjct: 2   KLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKK 61

Query: 219 GQEEEQAKKRTR 254
           G +EE +KKRTR
Sbjct: 62  GTQEEVSKKRTR 73



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 60  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 101


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 36/51 (70%), Positives = 41/51 (80%)
 Frame = +3

Query: 102 KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K  GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTR
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTR 88



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 75  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 116


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/47 (72%), Positives = 38/47 (80%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYRR  KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 34/47 (72%), Positives = 38/47 (80%)
 Frame = +3

Query: 114 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTR 254
           K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE +KKRTR
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTR 53



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 40  KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 81


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 212 QKGPRGRTSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG +   SK+   R  KFQR++ GASL +I+AKRN KPEVR
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVR 43


>SB_12513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 108 DGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRGP 260
           DG+ +     KCEA  L+  + + +T  VL  +      +E   + RT GP
Sbjct: 159 DGQFYMKSLKKCEAEELVATSAKSLTVRVLNEQDLTASLQEIAEETRTHGP 209


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 159 MRRNPRKVTWTVLYRR 206
           M+RNPRK+ WT  +R+
Sbjct: 1   MKRNPRKMKWTKAFRK 16


>SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)
          Length = 302

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 218 GPRGRTSKETY*RTQKFQRAI 280
           GPRG T++ETY R    QR I
Sbjct: 173 GPRGGTTQETYSRYSSHQREI 193


>SB_9015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 5/22 (22%), Positives = 18/22 (81%)
 Frame = +1

Query: 37  IRSDFAPIVDTKYIQAMARPWL 102
           ++++F+P++  +Y++ +A+ W+
Sbjct: 12  VKNEFSPVIKARYVRIVAQAWI 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,779
Number of Sequences: 59808
Number of extensions: 203240
Number of successful extensions: 571
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)